RnoINT0049046 @ rn6
Intron Retention
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:101015361-101017118:-
Coord C1 exon
chr4:101016876-101017118
Coord A exon
chr4:101015529-101016875
Coord C2 exon
chr4:101015361-101015528
Length
1347 bp
Sequences
Splice sites
5' ss Seq
TCAGTATGT
5' ss Score
5
3' ss Seq
AATTTTTTGTTGTCATTTAGGCA
3' ss Score
7.85
Exon sequences
Seq C1 exon
TGGCCCAGAGAAGCGCTTCTGTCCGTATCGAAGTCATTTTTCTCAGTTGTCGACACTGGAAACGAAGAACTAAAAGAAAAACTTTCCCTCATGTGTGTGAACGTGCACCTGAGTGTCTCCCACATGGCAGATCGCTACTACAGCGAGCTGCGCAGGCGCTACTACACCACGCCCACCTCCTACCTGGAGCTCATCAATCTCTACCTGACCATGCTCACTGAAAAGAGGAAACAGCTAGTTTCA
Seq A exon
GTATGTTTAGTTTTGTCGAACCCCACCTTTTTTGTGTGTGTGTGCTTAAAGCCAAAACTTTGGAGGGTGAATAAAAGATCTACACACCCATCTCGCCCCAAATGCTAAGCTTTCACTCTACCATGGAGCTTCATCTCTCTCTAAAGAGCTATCTCCGAACCAAACTCACAACCTATAATGACACCAAGAAGGGGACTGGGGGTGGGGTTGTTGTGTGCTGCTAGGACCTCTCCGGTCCTGAATGTTTATATTTTCCTTCTTTTATTTATGTGTTGTTGGTCCAATAGAACCAACCCAGTAGCACAGACGTTGAGCAGGGACCTCACTGTCTCTGTACGGTTTAACATGGACGAAAGCTCTCTGATGAGCCACAGAGATGGGTTCTGAATGCTCTAACATGTGCTGATGGCCAGCACCATGACCAAGGGCTTCACTGTCGCTCTCCATGCCACCCGAGCTCTGCCCCTTACGTCACAATCTTGAGCCTGTGATGAAAGGTCTGTAAGCTTTCATCTGTAAGAAGATAACCCTAAACTGGGAGAGATACATGTCTTCAGTTCCAGCACTTGAACTGTGGACGATGCAGACCAGAAGTTCAGGCCATCCTCAGCTACACAGTGCACTTAAAGGCTAACCCATACTACATGAGATCTCATAAGAACAAAAATTCATAAGAAATTTTTCGATTTAGAAAATAAGCTTTAGAAATACTTACAGTTCCTACTTGGGTTGTTGTAAATTTTAAATAAGATTCTGTGAAGGGAAAAATAAATACGTAAGGCACGGTGCTCATGACATATTTAAACTTTGGCCCAGAAATAGAGCCAATTAACAGGATCCAAAATTGCAACATCTTAGACCCAGCCCAAGTAGAAGGCTTTGCTGCTTAGATATTTAAAACACCTTTCCTAGCTTTGTAAATGCATGACTTGTTGGGAGCCCAACAGTCACCTTTGACTTCTGCCTATTTGAAATGATCTTTCTGACACACCTTCAAAGCAGTGTCTCCTCTTCCCTCAAGAGGAGTCCCTGTACTGTGTACCACCTCTGCAGTCCTAGATGAGGGTTTTCACCCCTTGGACATATTTGGTCCCTTCCTTCAGTGTGCCCAATGGTTCAGGGACATCCCACAGTTATAGCCAGAGGGCTCAGATGCAAACACCCAGTAAATAAGGAGGCCAGTTCCTAGCACTGTGCTACCTACAAAGGGTTCCCTATTTGTAGTAGGTTCACAACTCGAAGTGTTACAGATTGCTATGATGATTCTGTAGGTATAAATTTTAATGTATAAATAATGAGTGGCAATCTACAGCTTATAACACTTGTGAATTTTTTGTTGTCATTTAG
Seq C2 exon
GCACGAGATCGTGTAACGAATGGTCTCACCAAGCTATTAGAAACAAATATATTAGTAGATAAAATGAAATTAGACCTTTCGGCTTTAGAACCTGTGCTATTCCAGAAATCACAAGACGTCGAAGCCCTGATGGAAAAACTAGTGGTGGACCAAGAAAGTGCTGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581:ENSRNOT00000020894:48
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(26.3=87.7)
A:
NA
C2:
PF127772=MT=PU(15.8=94.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCTTCTGTCCGTATCGAAG
R:
GGGCTTCGACGTCTTGTGATT
Band lengths:
358-1705
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]