HsaINT0049856 @ hg38
Intron Retention
Gene
ENSG00000115423 | DNAH6
Description
dynein axonemal heavy chain 6 [Source:HGNC Symbol;Acc:HGNC:2951]
Coordinates
chr2:84701097-84703562:+
Coord C1 exon
chr2:84701097-84701339
Coord A exon
chr2:84701340-84703394
Coord C2 exon
chr2:84703395-84703562
Length
2055 bp
Sequences
Splice sites
5' ss Seq
TCAGTAGGT
5' ss Score
4.29
3' ss Seq
AAATTTTCATTGTCACTTAGGCA
3' ss Score
4.99
Exon sequences
Seq C1 exon
TGGCCCAGAGAAGCACTTCTTTCTGTGTCAAAGACATTTTTCTCACAAGTCGATGCTGGAAATGAAGAACTGAAAGAAAAGCTTCCCTTGATGTGCGTGAACGTTCACTTGAGTGTCTCCAGCATGGCAGAGCGCTATTACAATGAGCTGCGCAGGCGGTACTACACGACACCCACCTCCTACCTGGAGCTTATCAATCTTTACCTGTCTATGCTGTCTGAAAAAAGGAAGCAGATTATTTCA
Seq A exon
GTAGGTTCAATATTATCCATGAAAATATTGTTTTGCTTGAACTCAGAACTTTTGAGAATGCATGGAAACTCTATGCACTGTCTTACCTGTCAGGGCCCTGTATTAGTCCATTCTCGCACTGCTATAAAGAAATACCTGAGACTGGGTAATTTATAAGAAAAGAGATGTAATTGGCTCACAGTTCTGCAGGTTGTACAGGAAGCATAGTGCTGGCATCTGCTCAGCTTTTGGGGAGGCCTCGGGAAACTTTCAATCATGGCAGAAGGTGAAGAGGAAACAGGCACATTTTATGTGGCAAGAGCAGGAGCAAGAGAGAGAGGGGGGTGGTGCCACACACTTTTAAACACCAGATCTCACAAGAACTCACTATCATGATGACAGCACCAAAGGGAGGATGGTGGTAAGCCATGAGAAACTGTCCCCATGATCCAATTACCTCCCACCAGGCCCCACCTCCAGCATTGAAGATTACATTTCAACATGAGATTTGGGTGGGGACACAGATCCAAACCATATCAGGCCCTCTCCATCATGACATGTGCCCCTGACAACCTAAAATATGACCAAAAAGTGTTTCCTGCTGTTGGTCTGAGGGCCTTCTCCTTTTCAATAATTATATATATTTTCCTTCTGCCATTTATGCAAGTATCCTTGACTCAGTAGAATGATATGGGCATCACAAGACCATCAAAGTTATGCAGTGAACTGGTCATCTCTATGGTATTTAATACAGAGGAAAACATTTTGTTAAGCAATACAGATGGTGTTTTAAAGAACATGTGCCAGTGGTTCCGACTAAGAGCAAGGACTGGGGTATCAGCCAAACTGTGTACAGCCTATGTTCTGCCTCTGGCTATGCAACTTTGAGCACATTAGTAACTTCTCTAAGCCTTAGTAGAAAATAAGGCTAAAAGAAAATCTGTATCTACCTCTTGGATTGTCGTGGAATTTAGGACACTTTGTTAGTGAATTCCTGAAACTATGATCTGACACATATAAAGTGCTCAGAAAATAGAAGCTGCTGTCATCATCATCATCAGGAAATTAACATGACCTACAATTTTCTACATTTTAAACACACTAAAAATGGAAGCACTTACAATATAGATATTTAAATTTTTTCAGAGGGTTCTTACCTGGTTAAATGCCTGCCTTGTGAAATAACTTGACTGATATTTTTGAAATCTGCCCATTTGAACCAGCTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCATAATCTCGGCTCACTGCAACCTCCGCCTCCCAGGTTCGTGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTATAGTCAACCGCCACCACGCCCGACTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTTGCTGTAGCCAGGATGGTCTCAATCTGACCTCGTGATCCGCCCACCTCAGCCTCCCAAAGTGCTGGCATTACAGATGTGAGCCCCTGCCCCAGCCATGAGCCAAGCTTTCTGACTCACCTTCGAAAAACAGTTCTTCCCAGGTGTCTCCTTTACCAGATACCAGCCCTTTGATCATGGTCAAGAGTTTTCTACCACAGGGAAGTAGGTTTCAAATCCAGCAGCTAGAGCTACACCCTCTGGACCTCATCTCCCTAGGGGTCCTCAGCCCTGCTGGCCAGAGCAAACAAGCTCCCAGAGCTGCAGCCTCCAGGGATTCACATCTGGACCTGTTCCTCACTCATTCAACATGCTACCACAGGGAATAAAAACAGTACCATGTGGTCCTTACTCTCAGTGAGCCACAGCCCAGTGACGTCCCACTGCTGTGGCCAGAGGGCATGGATCCAAACAACTGTGATGAATGTCATGGCCATTTCTAGAGTTCCATTATCTGAACATTTCCCAATTTGTAATATGTTCACAACCTGAATTATTACAAACTGATTTAACAATTCTGTAGACGTAAAAGTCTAATACATGAGTAATATGTGTTCGATACCAGTAAACTTAGAGTTTATAATGCTCATTATAATATAAATTTTCATTGTCACTTAG
Seq C2 exon
GCACGAGATCGGGTGAAGAATGGTCTCACCAAGCTACTAGAAACAAACATACTAGTAGATAAAATGAAACTAGATCTTTCAGCTTTAGAGCCTGTACTTTTAGCAAAATCAGAAGATGTTGAAGCCCTGATGGAAAAATTGGCAGTGGATCAAGAAAGTGCCGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115423:ENST00000237449:48
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.070
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(26.3=87.7)
A:
NA
C2:
PF139001=GVQW=PD(9.1=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development