DreINT0058263 @ danRer10
Intron Retention
Gene
ENSDARG00000000606 | dnah7l
Description
dynein, axonemal, heavy polypeptide 7 like [Source:ZFIN;Acc:ZDB-GENE-030616-623]
Coordinates
chr1:21529172-21529537:+
Coord C1 exon
chr1:21529172-21529299
Coord A exon
chr1:21529300-21529403
Coord C2 exon
chr1:21529404-21529537
Length
104 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
3' ss Seq
GTGTTTGTATTTCTCTGCAGACT
3' ss Score
11.28
Exon sequences
Seq C1 exon
ATAAACTAGATATGGATGCAGCAGTGGAGAGTCTGTTCTTGCAAGACCCCAAAGGTAGAGTTAACTCTCTCACCACTGTGCTTGGACAGGAAGTAGACCGCTTTAACTTCCTGCTGCGTGTGCTCAAA
Seq A exon
GTAAGCAATGATAGATTGATTACAGTAGCTATTTAAACAGGAATGAATGAAATATTAATCGTACTAATCTGTGTGTTGTTGATTGTGTTTGTATTTCTCTGCAG
Seq C2 exon
ACTTCACTATGTACTCTGCAGAAGGCGATAGCAGGTCTGGTGGTGATGTCAGAAGAAATGGAGAAGATTTATAACAGTTTCCTGAATAACCAGGTTCCTGATCACTGGTCTAATGCTGCTTATCCATCTCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000606:ENSDART00000141317:74
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(5.6=100)
A:
NA
C2:
PF0302810=Dynein_heavy=PD(7.7=95.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGATGCAGCAGTGGAGAGT
R:
TGGATAAGCAGCATTAGACCAGTG
Band lengths:
243-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]