MmuINT0051038 @ mm9
Intron Retention
Gene
ENSMUSG00000052861 | Dnahc6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:72974819-72975836:-
Coord C1 exon
chr6:72975709-72975836
Coord A exon
chr6:72975005-72975708
Coord C2 exon
chr6:72974819-72975004
Length
704 bp
Sequences
Splice sites
5' ss Seq
CACGTACGG
5' ss Score
6.29
3' ss Seq
GATCTGTCTCGTTCTCTCAGATC
3' ss Score
10.98
Exon sequences
Seq C1 exon
AATCTCTGCAGATGGAGGGTGCTTCCGAGAGCCTTTTTGTCAAGGACCCTCAAGGACGCCTGAACTCTCTGACCACCGTCCTTGGCCAGGAAGTGGACCGGTTCAACAATCTCCTGAAGTTAATCCAC
Seq A exon
GTACGGAAGCTTACCTCTGCCATTGATGCTGGGTAGCCAGCCTTGTAGAAAATGCTCTAAGAACATGATTGGGCTTATCCGTCTCCATCCTGTCATCCCTAAGCTCCCATTTGGCTGTACTAACTGGTCCTCAGGCCCAGGCTGCGTATGGTTGAGTCTGTATTCCCTTATTCTAACAGCGACTGTATGACTGTGTGACATTCCAAACCCTCAAGCCCCTTCGGCGGTCTACTTTATGTCTCGAGTTCCATCAACCCACTTGAAATTTTCTGGGACCTCAGCACTCAGTTAAGAGTGAGTTGGGGCTGAGGAACTAGTTCAGTCAGTAAAGTGCTAGCATAATGGCCAAAGTGCGAGCCCCAGAACTGACGTGGGAGAAGAAGAAAGCCTCAGGCAGTAGCATACATTTGTAATCCCTTGGGGAATCATTGGCCATCCAGTCACACAATCAGATGCCCTCTTCTGGCCTCCACGGGCACACGTGGTACACAGATAATATGCACATGCAAAACACTTAAACACATAATAAATTTAATGTTTTTAAACAGTTCAGACAATGCCTGAGGAATGATATCCGAGGTTGTCTTCGCCATGTGTGTGCATGTATGTATGCTCAGACACAAACATGTAGACTGGGAAAACCATTGTCCTCTCCACCTGATAATTGCTCCTGTAATGAGCACTGATCTGTCTCGTTCTCTCAG
Seq C2 exon
ATCTCTCTAGAAACACTCAACAAAGCCATTGCTGGGCTTGTGGTGATGTCTGAAGAAATGGAAAAAGTGTATCAGAGTTTCCTGAACAACCAGGTTCCCTCTCTTTGGTCTAACACGGCCTACCCATCCCTGAAGCCACTGGGATCATGGGTCAAAGACCTTATTCTGAGGACTGAGTTCGTGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-Dnahc6:NM_001164669:72
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(5.6=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(8.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCTGCAGATGGAGGGTGC
R:
TCCACGAACTCAGTCCTCAGA
Band lengths:
312-1016
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: