RnoINT0049072 @ rn6
Intron Retention
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:100945399-100946608:-
Coord C1 exon
chr4:100946481-100946608
Coord A exon
chr4:100945585-100946480
Coord C2 exon
chr4:100945399-100945584
Length
896 bp
Sequences
Splice sites
5' ss Seq
CATGTATGA
5' ss Score
2.73
3' ss Seq
GATCTCTTTCGTCCTCTCAGATT
3' ss Score
10.13
Exon sequences
Seq C1 exon
AATCCCTGCAAATGGAGGGTGCTTCCGAAACCCTTTTTGTCAAGGACCCGCAAGGGCGCCTGAACTCTCTGACCACCGTCCTTGGCCAAGAAGTGGACCGGTTCAACAATCTTCTGAAGTTAATACAT
Seq A exon
GTATGAAAGTTTACCTCCGTCACTGTTACTGGGTAGCTGGGCCTTGTAGAAAACGCTGTAAGAACATGAGTGGGCTTAGAAGTCAACATCCCGTCATCCATTTGGCTGTCCTAACTATTCCTCAGACCTGGGCTGTATGTGGTTGAGTCTCTTGTTCTAATGGTGACTGTGTGAATGTGTGACATTAGAAACCCCCAAGCCCCTCCGTGGCCTACTTTATATTTTTAAAGTTCTGTCAACTCACTTGAAATTTTCAGGGACCTCAGCACTCAGTTAAGAGTGAGTTGGGGCTGAGGAAATAGTTCAGTCAGTAAAATGTTTACCTTGTAAGCACGATGGCCAAAACTCATGAACTCATGAGTTCCCTCCCAGAACTCATGTGGGAGGGAAAAAAAGACTCAGGCAGTAGCATGCATTTGTAATCCCAGCTCTGGGAAACAGAGAGAAAGGTGGATCCTCGGGAAATCATTGGCCAGCCAGCTTAGCCTAAGAGACAGCTCAGCAATTTAGAGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCCCTTCCAGAGGACCTGGGTTCAATTCTCAGGACCAACATGGCAGCTCAGAACCATCTGTAAATCCAGTCACACAGAATCAGATGCCCTCTTCTGGCCTCCATGGGCACCAGGCACACATGTGGTACACAGATATATACACATGCAAAACACTTAAACAAAGAAAATACTAAAATAGATGAATTTAGGTTTTTTAAAGGTGAAGACAATGCCTGAGAAATGGTGTCCAAGGTTGTCTTCGCCACAGATGTGCACACACTCATGCTCAAGCACATACATGTGGACTGTGAAAGTCCTCTCCACCTGATAACTACTCCTGAAATGTGCTCTGATCTCTTTCGTCCTCTCAG
Seq C2 exon
ATTTCTCTAGAAACACTCAACAAAGCCATTGCAGGACTCGTGGTGATGTCTGAAGAAATGGAAAAAGTGTATCAGAGTTTCCTCAACAACCAGGTTCCCTCTCTTTGGTCTAACACAGCCTACCCATCCCTGAAGCCACTGGGATCATGGGTCAAAGACCTTATTCTGAGGACTGCATTCGTGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581:ENSRNOT00000020894:72
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(5.6=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(8.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGAGGGTGCTTCCGAAAC
R:
GTCCACGAATGCAGTCCTCAG
Band lengths:
304-1200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]