DreINT0058264 @ danRer10
Intron Retention
Gene
ENSDARG00000000606 | dnah7l
Description
dynein, axonemal, heavy polypeptide 7 like [Source:ZFIN;Acc:ZDB-GENE-030616-623]
Coordinates
chr1:21317160-21318019:+
Coord C1 exon
chr1:21317160-21317274
Coord A exon
chr1:21317275-21317850
Coord C2 exon
chr1:21317851-21318019
Length
576 bp
Sequences
Splice sites
5' ss Seq
TTGGTTAGT
5' ss Score
4.82
3' ss Seq
TGTTTGCTTTGTCTCCATAGTTT
3' ss Score
9.65
Exon sequences
Seq C1 exon
ATGGCAATGAAGAATTAGCATCACCTGCTTTTAAATTGGTCTTTGAGGACACACCTGAGAAGATTACTTACACGCAGCAAGCCAACAAGAGCTACCACTGCAAACGCCTTACTTG
Seq A exon
GTTAGTCAACTTCTATAGCATTGCTAGCTCTCAACACAGTGGATTGACTAGACTGATTATTCAGCATATGTTTTTGATTATGGACAATGTAACTGCTAAACTGGCTGATTAACTATTATTTTGAATGAATGTACGCATTGGATAACTTGTTAAAAGATCTATTGACATCTGAAAACACAGTCACATCAGCTTAAGATGAATGAATATACAATATAATATATTTAAACTTACAAATAAAACTGGTTCTTGGGGAACCAGAAAGGCCAGGCTAGTTCTATTAGGCTATAGAGTTAATAAGTAAAAAGTTTTGTCATTCGGTCATTTATTATTGACCTTTAATTCATCCCAAACTCTGTTTTTTTATTTAAGCACAAAAAGAGGTTTTGAAAAAAAAATAAATAAATAAAAAAAAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATATATATATATAATATAATATAAAATATATATATATATATATATATATATATTTTTTATTTTTTTGGAATTAATGTTCAATTACTGCTATTTTTTTGCCAAATGTTTGCTTTGTCTCCATAG
Seq C2 exon
TTTCATCAGACTTGCAGATTATCTGATTGTGAACACAACCCACATGCTTGTGGTCAACTCGGTCAGTAAGCTACTAAGAGTTTTTCAGGAGCATATCACACACACCCCTTCACCCGCCCTCATTCAGAGCTGGACGGGTAACGAGATCAGCCATGATACTGATATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000606:ENSDART00000141317:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=NA C2=0.053
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCAATGAAGAATTAGCATCACC
R:
ATCAGTATCATGGCTGATCTCGT
Band lengths:
278-854
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]