RnoINT0049069 @ rn6
Intron Retention
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:101138243-101139546:-
Coord C1 exon
chr4:101139420-101139546
Coord A exon
chr4:101138412-101139419
Coord C2 exon
chr4:101138243-101138411
Length
1008 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
GCCTTTTTTTTTTTCTCAAGCTT
3' ss Score
7.81
Exon sequences
Seq C1 exon
ATTACTTTAAGATCAACATTGCAAGTTTTATCGACGCTCCGTCTGATTTACCCACTTACGGAGAATCTGAAAAAATGACCTACACAGAACAGGCCAGCAAAAGACATCACTGCATGAGGCTCACATG
Seq A exon
GTGAGAGCATCTACTTTCTCTCAGGATAAAGTAGGGAATCTATCCTTAAGATATGGAAAAGTCGGGCTGGAGAGATGGCTCAGCCGTTAAAGGCTAGGCTCACAACCAAAAATATAAGATATGGAAAAGTCAGCCCCGTGCTGGGGACATGGCTCAGTGGACACACCCCAAGCCTGACGACCTGAGATGGATTTCTAGAACCCATGAAAAACGTAGATACAGCTTGCAATGCCAACCCTCCTGTAAGGACACAAACTGTGGCCTCTGGGCTAAGAGCTGCTGTCAAAGAACACTGATCTACGCCCTGAGTGCTGGGTTACATCTGTGATCCTTCCAAAGAACAGGCATCATGAATGCCCTTGTTACAGAGGTTAATCTCCCAAAGTACACACAATTTAGCACATACATGCAAAGATTTCATACTTTACCTACAGACCCAAGTTAAGTTACACGCACTGTGTGCACTGAGCTTTTCTTCTTTTTAAAAAGAATTATTTATTTTATGTATATGAGTACACTGTAGCTGTCCTCAGACGCACCAGAAGAGGGCATCAGATCCCTTCACAGATGGCTGTGAGCCACCATGGGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAACCATCTCTCCAGCCCCTGAGCTTTTCTTTAAAGCATTTTGAAGAACTCCTGCAGTCTACTGACTGGAGGATCTGGGCGCATTATTCTTAATAACCACCTTGTTCATCACATAGCCCATGGGAAAGATCAAACCACTAGTTAAATCACTATCCTATAATTGAATATATTTTGCTTTCTGGGGAAGAAGGTCTAAGAACAACTCTGAACTATCTCATGTTTTAATAAAATTCAACCAAAATTCCAGGAGACACCCATGTTTTACTTTTTAAATCATTGCCTTAGAGTTGCTGTGAACAATGCATAGCATAGCAATCGCAGAAAGCCAAGAGTGTTTAGTGTTTGCCTTTTTTTTTTTCTCAAG
Seq C2 exon
CTTCATCCGTCTGAATGATTACCTAATTCAGAACACCTTGCACGTCTTAACGGTAAATACTGCCAGCTCCCTTCTGAATTACCTCTCGGATAAACTAAAGCGAACTCCCTCAGCAGATGTCATCCAGAAGTGGATTACTGAAGATAAGCCCGAAGTCATCGAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581:ENSRNOT00000020894:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=NA C2=0.035
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCAACATTGCAAGTTTTATCGACG
R:
CGATGACTTCGGGCTTATCTTCA
Band lengths:
278-1286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]