DreINT0058284 @ danRer10
Intron Retention
Gene
ENSDARG00000103383 | dnah9
Description
dynein, axonemal, heavy chain 9 [Source:ZFIN;Acc:ZDB-GENE-020925-1]
Coordinates
chr12:192552-193720:-
Coord C1 exon
chr12:193590-193720
Coord A exon
chr12:192764-193589
Coord C2 exon
chr12:192552-192763
Length
826 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
GGCATTGTTGTGTTTTTAAGCTC
3' ss Score
7.12
Exon sequences
Seq C1 exon
GCTTGCTGATCTTCAGGGAATCCAACAGCAGCTCCAGTCTTCTAAAGTCCTGACGCTGGCGGAGCTTCTGCTCGCTGTGGACAGCAGCTATTATCCTGCATTTGCAAAAATGATCCAGGACGTCATGGAAG
Seq A exon
GTTTGTACACAAACACACTAGATTATAGATAACCTTAAGACTAATGTCTAAAAAACTACAACAAGGTATCCTGAGGAATGCTGTAAATAAGCAGATATAGACATCCATACTAGGAACTAATCAAAAAATACTATGGAAGTCAATGGCTGTTTTTCCAGCTTTCTTCAGAATATCTTGTTTCGTGTTCAACAGTAGAAAGAAACACAGGTTTGAAAATTCAGAAGTGACTTATCTGGCTGAACTTTGCCTTTAAAACACAATGATTAAACTGTGTGGAGAATGCCTCAGTGATTGGGTTCATTACTGGAGCTGCACTGCAGAATTTCAGCTGACTAGACCTCATCACAGGATTTACAGCACTACCATGGGTTTTTAGTTTTGTAAATAATTAAGCAACATCAGAAGCACAAGTGCATGTTATCAGCATGATTATGAATGGGATATTGATTTGCTAAGATGGTAACATCAAGCTATTTCAACTTGGACACAATATTGTCAGATTTTATTGTAGTTAATAAAAATGAGTAGCAATAAATATCTCCTACTGACCATTTCAGTCTCCTTTTTGACCATAATTTAATTTATTTGTCAATATTTTATGCTTCTGTGAAACTTTACATTTAAAGCATTAATCTCATAGGATTGTCATAATGATTGTAAATGAATTCAAGTCACCTCCGAGCCTCATTGAACATTCAGTAAAAACAGCTCAGGGTCACTCTTCTGTTTTTGTGCGCTAGCTCCAACAGATCTATAAATATGAATGTACTTCTGAAAGAAATGGGACTGTAGGGCTCTGAGAGAGTGGCATTGTTGTGTTTTTAAG
Seq C2 exon
CTCATAACGAGTCGAAGAACATCACAACCTTCCTGAAGCCGCTGGAGAGGCTGATCGAGGATCTGGAGAACGCAGACTTCACTGAGCTGAAGGCAAAGATCCCTCCGCTCATGCACACGGTGTGTCTGATCTGGGCCAACTGCAGATACTACAGCAAACCAGCCCGAGTCATTGTGCTCCTGCAGGAGATCTGCAACCTCCTCATACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103383:ENSDART00000161178:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(10.4=100)
A:
NA
C2:
PF083857=DHC_N1=FE(16.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGCTGATCTTCAGGGAATCC
R:
TGCTGTATGAGGAGGTTGCAG
Band lengths:
342-1168
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]