HsaINT1011607 @ hg38
Intron Retention
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11611650-11617622:+
Coord C1 exon
chr17:11611650-11611780
Coord A exon
chr17:11611781-11617410
Coord C2 exon
chr17:11617411-11617622
Length
5630 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCATCTCCAATTCCTTCCAGCTC
3' ss Score
7.37
Exon sequences
Seq C1 exon
GTATGAAGATCTGAAATACATCTATAATCAACTGAGAACAATAACGGTGAGGGGCATGGCCAAGCTCCTGGACAAGCTTCAGAGTAGCTACTTTCCAGCTTTCAAAGCCATGTACAGAGATGTTGTTGCAG
Seq A exon
GTGAGGACCAGCAAGTGTTTTCACAAATGTGTTTGACTCAAGTTACCGTCGAATGATGCATTCACCTCTCTCTGTCTGAATTCCGCAACTTCAAGTCCTTGTAAATTTCCGACCCGACACAAACTAGCATGGTGGCAAGAATACCACATCTAGATACATGAGAGCAGCTAAACAGAGCTATGCTGTTTGCAGTTCCACTGCTGTATGGCCTGGGAAAATTCACCTAGCCCCTCTGAGCTTTAGTACGTGTGTTGGTTATGGGGCATACACTTCTGCCTACTTTTCTAGGTCCGTGTGAGATTATACAGGTGGAAGAACTTATTGACTTAACACAACAATGTTCCTGGAGCTGTCCCTTTGTGTCTTTCAAACACTGGGGCCAGGACATACAGTTCTGGGGTGGCCATTATGGAGCCTGTGTGACCAACTCCAGGGTGGTCATGTGAGTCCATCTGTCCTAATCAAGGACTACCCTTCTGGCAAGACAGCCTAACCATGCCTTCCAGGACCTGGGATTATTGGCTGGGACCCCTCATTAACTAAGTGCTTGTACCTCCCTGGCACGCTGGGAACTCCTGGGTCTGGTCAAAGGTCTTTCTGGGCCTGTCTTCAGGGTCTGGAAACTACTAGAAGAAAGTTCTTCCATCCGATCTGCCTACAGCTGCTGCTTTGCACTGTACAAATCCATGTTGTTACCTCTCACCTCTGGAATTCAGGTCCCTCCACCTTTGGCTCCTTGAGAAATCTCTATTCCATTTCTAGCTCCATTCTGCATTTTCTATTCCTACTGTCAGATGGGACTGCAATTTCCTGGCCATTTGAGCACCAGACAAGATCTACGCTTATCAAAATTGCCAAGCCAGCAAAGTCTATGATTAGAAGTAGGTAAATTTTTTTAGGACTCCCTCTCCATTTCTTGGAGCACTGTGCGTCTTCTCCCTTTTTCTTGTAAAATCTCCTCTTTGCTCTTCAGTACCATAGGTCAAAATGTGCTTTTAAAGGTCTTTGTCATTTCACATGGTCTAAGCTTAATTAAAGCAGTGATTTTCAAACATTTTACTTTGCCCAGAACTCTTTCTTTAAATACAATCTCCCATGTAAGCCCACTACATAAAACGAATCCAGGCATGTTTGGTTTAGTAAAAAGGGCAGTGTCCTGTGCCCAGAGCCCATTGGCTACTTCCCTGTCCCACCTTCCCCTCTCATGGCATGGAGTTTGCAAACATCTTAGCTAAAGGAAGAAAAGTCCAGGTGTTAGTTTCCAACATGAACTACATCAGAGAGCAGAACTGGCATAAGTTGTTAGTCTCTGAGGTCCTCCCTGACCCTGAATCCTCATTGCAGAGGCAGCTCTCCCAGCACGTTTGGCTGGCTTGGGACCAAGTGTCTCTTGAGGCTCCAGCTTACTGCTTTGCTGAGAGATTCTGTGTTCCCGAGGAATCAGCTTTTGTTCCCAGTTTACACTTCCAGGAGACAGGTGTCCCCAGAAGTGGTATGTGTATCCCTACTGATGTCAGAAATGACTAGGGGAAAGTTTTTTAAAAAAAATATGTTAAAGGGGCTTGGCACAGTGGCTCACACCTGTGATCCCAGCACTTTGGGAGGCCGAGGCGGACAGATCACGAGGTCAGGAGATTGAGACAATCCTGGCTAACACGTTGAAACCTCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTCCCAGCTAATTGGGAGGCTGAGGCAGAAGAATCACTTGAACCTGGGAGGCAGAGGTTGCAGTGAGTCGAGATCGCGTCACCGCACTCCAGCCTAGTGACAGACCGAGACTCCGTCTAAAATTTAAAAAATAAAATAAAATTGTTTGAGGGTAATAGCCCTGGTTTTTGCAAGTGATACCAGCTTTCCATTTATGGTAGTGATTTACAGTTTTCATGTTGTCTAATTTAGTTGGGTTAAATTGGGAGTCAATGTAGAGAAAAATATGAAGTAAGCAATAGAGTGCTACAGATTATACATATGTAGAACACATACAAAGGACATATGTGAATGCCTGAAATTTGGGGCTCTGAAAAAGATGTAGTAAAAATATATTATGAGTTTGTTATTTAGTGCCCCAAATATACTTTTCACATTAGTAGATCAATAGACTATAATTATTCATATGAATTAATAGTTATAAGATTCACTTCCCCAGGTGAGCTTCAAAAAGTTATTTGCAGTAGAGTATATGCCGGCAATGAATTTTTTTTAAAAAAGATACCATTACAATAGTGCCAGATAAACACTACCATAAAAAGAGAAATTCTTTAAATATGAAACTCAGTGTCAATGATGGAAGAAAATTTGATTAGAAGAGTTAGGTAGAGACTTGGTCAGAAAATTTGGCAGGATCTTCTAAGCTGGTGACTGATTTTCTCATTTCTAGCTGAATTTCAGAGCATCTTTTTTTTTATCCTAAATAGATACACTATGTGCATTATTCTTATTAGGCATGGTCAGGGTCGTTTATTGACCTACTGATGAATTGGAAAGAAGGAGAGGAAAAGAAATATTTCTGGATTGGTGGATATGAATTAGAAAACAGTGAGAAGAAAAAAGGAGGTTAAAAGGATGGAGGAAAATATGCAGGAACCCGATTGTATGAAGTAGTATTGACTGAGCAGTAAATAATCTTGGAAAACAGGAAAGCAACAGTCCCCTTGAGAAGGAAGAACAAGGGCAATAAAGACTAATTAGAGAGTTTTCTTTATTTGCACAGGATAGGCATGGTACAACCTGGTTGCCAAGTTTCTGAGTCCATTTGTGCTGCTTTAACAGAATACCACAGCCTGGGTAATTTATAAAGAGCAGAAATTTATTTCTCATAGTTCTTGAGGCTGAGAAGTTCGAGATCAAGGCACTGGCAGGTTGGGTGTCCGGTGAGGGCCTGGCCTCTGCTTCCAAGATGGCGCCTTGTTGCTGCATCCTCCAGAGGAGAGGAACTCTGTGTCCTTACCTGATAGACGGTGGAAGGCAAGCCAGCCAAACTCTATGTGAAGCCTCTTTGATGAGGGCCTTAATCCCATTCATGAGGGAGAAGCTCTCATGGCCTAGTGGCCTCTTAAAGGCACCAACTCTTAACACCATCACATTGGCCATTAAATTTCAACACCTGAATTTTGGAGGGGACACATTCACATAGCAGCAATTAAGGATGTGTGTAGGTAGATACGTGTGTGAAAGAAGGCACACAAAGAAGGGCTGTCTGGAGCCAGTGCACACTGGTTTGCTGTGGCTCGTGAAGGGCTGCTATATGCATTGTTTTAAACCTTGCACCCCCATTCTCCCAAGCAGCACTCAGCGAAGTCAAATTGGTAGCCTAGAAATGGACATGGTAGGAATACTGGGAATATTTATACCATAGAAATTGGCAGATGCTACAAATAAACGTGTTTGTCCTCAAAGAGCCTGTTGTTAAAGACTTTCCTGCAAACCACTGGAGATCACTATGCACTTTGCTGTTTGTATTTACATTCTTTAAAAAGGTATGAGCTCGGCTGGGCACAGTGGCTCACACCTGCAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCACTTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCAACTCTACTCAAAATACAAAAATTAGCCAGACATGGTGGTGCATGTCTGTAATCCCAGCTACTAGGGAGGCTGAGGCAGGAGAATAGACTAAACCAAGGAGGCAGAGGTTGCAGTGAGCCAAGACTGCACCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCATCCCCACCCCAAAAGAAAAAAAAAAGGTATGAGCCCAGCTCTCTCTCTCTCTCTCTTCATATGCCTTGTCATCCAAGGGTATTGCATCCTGGGTTGGATGGCCAACCCTTTTCTCAAGTATTGTGCTCTTAAAAATCAAGGCAATGCTAATTAGTATAATTAAAAGAGATTGTGATTTTTAAAAAGATTTCAAAACAGGGTATCATAAAGAGAAAGCTCCTATAGCATGATAGTCTCAGCCTCTTTTCTCTCAGCACTTACGGAAGCAAGAGCATGCGCTCATTAGAATGACTGTTGGATTCTGAAATCCCCCACCCCAACACAGAGGTTCTAATACTCACCATCAGCCCCTCCACTTGAGAATCCCTGCCCTAATCAATTTACTGTGACATCTGACTTTGCAAAAAATTCGATTCACATACTGCTTTCCACAACCTTATTTGGGATATAAAGTACAAACATACATATCAACATATTTTTGTGTATGGTGAGCCTCCGTGAAGCCAAGGGTTCAATGTAATAAACTCTGGGTCGTCTTCCTTTTCCTTAGCTGGACAGGATTGGTTGTTTCATGGGAGGGCCCTAGGAAAGTTATTCAGACCTTAATTTCTTCACTTATAAAATACTAAAGTATGAAGTACTAAAGCTGGTTTGCAGGGCTTTCTGTGAGATGGTAAATATCTCATAGATAGTAAGTAGAACAATTCCCGGCATATTGAAACTGCTTCCTAAATAGTGTATATTTTGAGTTCCCTTTAGGATGAATGCAGAGCTTCATCCGCATACTGTAACCTAAGACCACCTGCTCTCATATGATACCACCTGATTATCTGCCCAGGACAGAACCAGCCTTTGTAAACTCGCCCTTCCAATTTAGTTTGTCCAATGCCCTTTTGCATTCCCTCTAAGTTGCTACGCAGATATTAGCATCCAGTGCTGCTGGATTTCCTAGTTTCCCGTGTCAGTCACCACAAGACGACTGGTTAAAGGCCCCTTTCTTTCCTTGGTTGTATTCAGAGGAGATGGTAAGAGATTTTCCTGGCTTTGAAAACCAGCAGAACCTTGCCATAACCCATCTATGTTATGTCTCTATGCTCTGTGACTTTTTTAAAAAAATTATACTTTAAGTTCTAGGGTACATGTGCACAACGTACAGCTTTGTTTCATATGTATACATGTGCTCACTCATAGGTGGGAATTGAACAATGGGTACACTTGGACACAGGGTGGGGAACATCACACATCTGTGACTTCTTTATAAGTGCTCAGCAAGATTCTTTATTAGTGAATATTCATCAGAGCCACCACCATTTATCAAACACCTGCATTGGTCCAAGCACTGTGCTAGTTGTTTATAAAGATTCCTATTGAACTACCTTCAGCCTTCACAAGGACCCTTTAAACTGATTACAGCTCTGCCTATTTTTGAGGCTCAGAGAGGTTACACGTGCCCAAAGTCATACAATTGCCAAGCGTCTCGGCCAGCATTTGAAGGAAAGTCTTTCTGATTCTAAAACTTGTATTGTCTCAGAGATAGCAGCAAAGTAATTGGCAAATATTTACTACCCACCAAGCACCAGATGGAGGCTGGGAGGGCCAGGGAAAAGTCCATTTAGAGGAATGTTACAAGACAGAACTCTTCAGATCATTATCCTAGTTGTTCAGGGCTCTCCAGTTTCCATATTTCCTCATAAGAGCTAGGAAGTTTTCTGGAACCAGCCTTCTCTCTGCTTGTTGTTTTGCAGGTCTTTTACTTCCCAGGGACTAGGGCTCCACCAGGTGGGTATTAGGCTCCAGATGGGAATGCTGACCATCTCCAATTCCTTCCAG
Seq C2 exon
CTCTAGCAGAGGCACAGGACATCCATGTGCACCTGATACCGCTCCAGCGCCACCTGGAAGCTCTGGAGAATGCAGAATTTCCGGAGGTGAAGCCCCAGCTGCGGCCCCTGCTCCACGTGGTCTGTCTGATTTGGGCCACATGCAAGTCCTACCGCTCCCCGGGAAGGCTGACTGTGCTGCTCCAGGAGATTTGCAACCTTCTCATCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174:ENST00000262442:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(47.9=71.4)
A:
NA
C2:
PF083857=DHC_N1=FE(12.0=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains