GgaINT0127334 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GG21]
Coordinates
chr18:1035597-1037868:+
Coord C1 exon
chr18:1035597-1035672
Coord A exon
chr18:1035673-1037656
Coord C2 exon
chr18:1037657-1037868
Length
1984 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TCTTCTGCTGCTTCACACAGCTT
3' ss Score
6.71
Exon sequences
Seq C1 exon
ATGATGGAGATGCTAGAGAGAGTTGAGAGCAGCTACTTACCAGCCTTCAGAACTATGCTCATGGATGTTGAAGCAG
Seq A exon
GTGAGATAATGGTGCAGCTTTGATATATCTGTATGGAATGACCTCTGGCCTTTGTTCATATCCTAGTTCTACTGGTTTCAATCCTAATGTGTGGGCTTGGTCCTTAGGAGTCCACTATGACCACAGGGACTGCAACCACAGTGCTAGTCCTGTTTTGTGGCAAGAAGTTGGTTTGCTTGTGCTTTTGTTTCTATGCTTGGACAAGTGTGATCACTGTTCTGTTGAGCCAGACCTTTCCCCAGGGTCAGGGTGAATGGATTTGGGAATTCACTCTGTTGTAGTAAAGCAGTCACAGCAATCCAGCAGGACTCATCCGAACTGATCTGAAACACAGTGTATCTTGAGACTTCATTTCATCAGCTCCTGTGGTGTCATTCTCCAAGACTGCAGTTTCAGGACAGCAGGACAGTTCTCACAGCCAACAGAAAGCACACAGGCCTTCGTTAGGTTATTTTCCAAGCTTTGGCTGCTGCAGCCCCAACCTCTGTGGAAGGGTAGCAGCATTTCAGACTTTATGATAAGCCCTTTGGACGTGATGATTTCAAGGTCACCCCTTCGCAGATCTCATTTAAGGGTTGGCAGTGGAGGTGAGGGTATCTCTTGCTTGAGATCCCTGCCTACCTGAGGCCTTCCGAAGGTAAGCAGCTCTTTTCCTTCATTTCTGCATCCACAGCTGCTGCACTTGGGCTTGTTCTCATTTGCTGTAGGCAAAGACTTTGCCACCCTGTTGTTATCACAGTACTTTCCATCCTCTTATAGCATTACAAGAGTATTAAATCATTTTTTTCATTAATGAGAAAACATACAATGAAGGATTTTTTTTCTCCTGTTAGTGAAACAAAGTTCTACCTTTAACATGCAGCTACATGAAGATAGCGAGTGAGTTTTGCTTAGGGGAGTTCAGTTCAGCCAAAAGAAATACTGCAAATTCCCCTCTGCAGTGAAAACCAGCAGCACTCTGCTGCTCCATCGCCTGCATCCCACTGTGAGTGACCATCCATGTTCATCTTCATCCCAGCTGCTCTGTGGCAAGAGGAAGCTATTCAGGCTTTGCCAGCTGTGTTCATGCTGACGGATAATAATACTCTTATTTACTTCTTCACATGGAGACGTTCCTTTTTTTAAGGACGTATTACAGTATGCACAGGGTATGGGCAGTGCAGATCACTAGGGCTAGAGAAGTACCCACTGTATAAGGAACCAAGAATTCATTGTCAGTCTAATTAATTCTTTAATAGCCTAATCAAAATACAAAACATGTTTGGTTTTAGTACTGTTACAGCAACACCAACTGGATAATTTGGATTGTAATTGTTAAATCCCATTACAACACAGTTCAGATTGGTGGTGTGCTCTTTGTGCTGATGTCTGTGTCCCTGGGTCTGTGCAGGGGGGTCAGTGTTGTTAGTGGGGGTTTCTTCTTCCTTCACCTTGGATTCTGGGGTTATCTTCATATGTACTTGGTACTTCTGTCGCTTCTTGTTGGTCTGTAGATATAGTTGCATCGTGATCGTATGATGTCATTCATGTTTTTGCTCTGTAGGATTTTTCTCAAAGGTAAAACTACACAGATGTACAAAGTTGACTCATGTCTGTGTGGGTGAAAGCTTTAGCTTAACTTGCTGTTGGACAGCTGTGCTGCACAGCCAGGATGAGTGGGATTGTGGTCACCTGGGCAGCTGGCTGCTATAGCTTAAAGAAAAGCTCAGGCCAAGACAAGCCCTGCAAGGCCCCTCAGCCTGTGCTGCATGACAGGGCCTGCAGGCTGGCGGAGTGATGGCAGCACACATTTACAGCACTCATTTTCCTGCATCTCACTGAGCAGTTCCAGACCCGGCTTCCATCTCTGTTGGTTATTGTCGTAGATGAGCAGTGGTCCTGGGCCTTCTTTGGCACCTGGGTGTCAGAGTACACTTCGTGGTTGTTGGGGTGGTTTGCACCATGTGTAGGTGGGTCCCATCAACTCTTCTGCTGCTTCACACAG
Seq C2 exon
CTTTGAGCGAAGCCCAGGACATCCACCTGCACCTGAAGCCCCTCAGGCGCCCTTTGGAGGACATAGAGAGGACTGATTTCAGCAAGGTGCAGCCACTCCTGCTCCCCCTGCTCCACGTGGTGTGCTTGACCTGGGTCACCTCCAAGCACTACAGCCAGCCTGCACGCATTGTGGTGCTGCTGCAGGAGATCTGCAACCTTCTCATCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026090:ENSGALT00000043114:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PU(7.8=96.2)
A:
NA
C2:
PF083857=DHC_N1=FE(21.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGAGATGCTAGAGAGAGTTGA
R:
TGCTGGATGAGAAGGTTGCAG
Band lengths:
286-2270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]