DreINT0058326 @ danRer10
Intron Retention
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10397559-10399460:-
Coord C1 exon
chr6:10399221-10399460
Coord A exon
chr6:10397721-10399220
Coord C2 exon
chr6:10397559-10397720
Length
1500 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
GTGTGTGTGTGTGTGTGTAGGGA
3' ss Score
8.86
Exon sequences
Seq C1 exon
AGACACTTCTCAGTGTTTGCTGTACATTTCCCCGGTGCGGATGCCCTGAGCACTATATACAGCAGTATTTTGAGTGGTCATTTCCAGCAGGGTGGCTACAGTTATGGCGTTAGTCGTATGTCCAGCACGCTGGTGCAGGCCGCCATTTGCCTGCATCAGAAAATGAGCCAGAACTTCTTGCCCACAGCCATTCGGTTCCACTACATTTTCAACCTCCGGGACATCTCTAGCATCTTCCAG
Seq A exon
GTGTGTGTCTATAAATAAGATTGATGCGTGTATGTCTGTGGCCTAGTTATGCCGCTTTTTATATACTGTACAGCTCACTATTTCTGTTTAAGGGATAGATTTTTTTTAACACATTTCTAAACATAACAGTTTTAATAACTTAATTTCTAATGATTTATTTGATCTTTGCCATGATGACAGAACATAATATTTTACTAGATTTTTTTCAACATACTAGTATTCAGCTCAAAGTGATATTTAAAGGCATGAATAGGGTAATTAGTCAAGTCATTGTGTTACGATAGTAAATATTGCAAAGTTAATAGAAAAATATTGCTTAAGGGGCTATTAATATTGACCTTAACATGGTTTTAAAAAATGTAATTGCTTTTGTTTGAGCCGAAATAAAACAAATAAGACTTTCTCTAGAAGAAAAAATATAATAGGGAATACTGTGAAAAATTTCTTGCTCTGCTAAACATAATTTGGGAGATATTTGAAAAAGAAAAAATCACAGGAGGGCTATCAATTTTGACTTCAACAGCATATGCTCTGCTAGTAGATTTGTCATTTATTAGGGTTGACATGCTCGTTCCTGGGCTCCTATATATTCATAGATATATACACTAGATATCGCATAGGGACCCTGAGCATGCGTCAATAGCGCCGCCACATTGGTACAGTGCTCCCAGGACAAATGTCATTCAACCGCACTGAATGTCATTTCCCGTGATGATGCGGGTCTTTAGAGCTGTCTACGGGTGTAGTAACAAGCAAACAAAGGAAACAAAGCACAAAGGCTGAATATTTCATAGGTAATATTAAGTTTTTTTTTTTGTTTTTGTATGTTCTGAACTTTTGTGCTATTCAGGTAACGTTATTGATGACAACAGTCACTTACTGCATTCACCATACGGCAAAGCAGCTCCAACTTGCACTAAACACTCGGCTTATGCTAGTTTTGTTGAATAAAATCAGCAAACAATGCAAAAGAAATATGACAACGAGATGCTGCGCTGCCAGAAACTTGTATTATTGTCGGCTAACGTTAGTGAAAGAGTCGTTCGGGGGATTCATTCACAAACGAATCGCTCCCTCCGTCAGTATGAGAAGTGAAAGCAGGAGAGGAGGTGTGTTTCAGGACACGATTAGATCAAATTTAACAGGGAGGGTGAATAGTACATTTCTGTACACACAAACACCAAGCTTTTTGTCAGGAATGCCCGTGCGAAAAGTGATGTAAAATTATAATTTTCGTAATTAGAAAAAAATTACATACTAACATCCAGGAAAACTCCCGATCACAGATATATGTGTATATGTGTATATCTCTGGCTTCGGATGGCCACAGTCCTCCACTGTACCTTGGTCCCGCATTCATTTTAAAGAAGCGCTACCCTGTAGCAAGATGGCAGCACTATTGACGCATTCCGTCCAATAGACAACAATAGGCCAGGCGACATCTAATGTATATATCTATGCTATATATTTATATGTGTGTGTGTGTGTGTGTGTGTGTAG
Seq C2 exon
GGAATTCTCTTTGCTCTGCCAGAGCATGTGCGGTACCCTATAGACCTAGTGCACCTATGGTTGCACGAGTCGTCTCGTGTGTATTCAGACAAACTGATGGAGGAGAAGGATGTGGAGCTCTTCAACAAGATCCTGTTGGACACGGGCAAGCGATACTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630:ENSDART00000150908:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(29.2=100)
A:
NA
C2:
PF127752=AAA_7=PD(8.1=40.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGTACATTTCCCCGGTG
R:
AGCTCCACATCCTTCTCCTCC
Band lengths:
343-1843
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]