BtaINT0050276 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30616970-30619014:+
Coord C1 exon
chr4:30616970-30617209
Coord A exon
chr4:30617210-30618852
Coord C2 exon
chr4:30618853-30619014
Length
1643 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
TTTCCCTTCTTGCCTTTTAGGGG
3' ss Score
12.91
Exon sequences
Seq C1 exon
AGACATTTCACAGTGTTTGCATTCAACTTCCCATCGCTGGATGCACTGAACACCATCTACAGCCAGATCCTGAGTTTCCATTTCCAGCAGCAAGCATTTGGTCCCTCAGTTCTCAGGAGTGGCCCCACTTTGATACAGGCAACAATCGCATTCCATCAGATGATGGCACATACATTTTTACCCACGGCCATTAAATTCCACTACCTCTTTAATTTGAGAGACTTGTCAAACGTCTTCCAG
Seq A exon
GTACCTCGATGACTCTGTGTTATGTGTCTTGAGTGGGGCACTGATTAAAGTAATACCAATGGGGTTCATTCATAGAACTTAGTCTAAAACTATGCTGCATCCTTGAGCATGTATTCTTTCATTTTCTGTAATCAGCTTTATGAAGTATGCAGGTTTATTAATCCCATTTTGTCAATGAAAGTAGCAATTCCCCTTAGGTTGGTAGAGACTTAGCAATAGAAGCTAAGGTAGAAATCTTGGCTCCCTATTTCATTGATTCTGAATATGATTCTGTATAAATATTTGAGTGTCTCATTTTGTGCAAGTAAAAGGGATAATTTTTTTTTAATATTTAGGTGATAACGATTTTTAAACATACATCAAGAGAAAATATAATTTCTTAAATTCCTATTTTGGTTTGGCATTGACACTTAACTCACTTATCCAGTAAAAGGACAGTGTGAATGTATATGATTTGAAAAGAAAGTTCCAAAGAGAGAATTCAAAACCTTGAAATTTTGAAAATATCCAACTTACATGGCCTATCAGTAGGGTAAAAGTAATTGAAGAATTATTTATGGCTCAAAGTTCATTTGTGACAGAAGTAGTAAACTGGTGGAATATGAAAACTTCATGAGACTTCTCAGTATTTGGTGATTTTTATTTCTTATACTTTTATAGTCCTGCTTTCTAAATCACTCCACAGCTGCCTCACAACTGTAACCACATTAGGCAAAAGCTTTTTCCAAATGCGGACCATTCCTTTTCATGTCGATCTTTCTTGCACCTGCCTGAAAGACTGTGCTCAATTAAACGGTCTTTAAAAGCAGGTTTTTGATCATAGGAGGGAAGGGAGGCCAAGAAGTGAGAGACCTCTCTGCTCACCATTCATATCCAGTCTGTTGACTAAACCCAACACCACCCAACAGTTGTTTAACCTTTTACAGCTAATTGTCTATGACTCCCTTGGTGCTGTCCCTAGAGCCCAGCACACAGTGACTCTCCCCATGAGAACTGGGTCTATATGAATCCAAAATATTGAAGAATAGTGTTGCAGGAAAGTGAGAATCAAAATGTTTTGACTACCCACAAAATGTGCATTCAGACAGTCAGCTCTGGGTCTTATATATTTCATCTGTAAAATGAATGAATTCGATTAAATGACATCACAGGATTTTAGAATAAAATATATTACTGTCCTATGACTTCCATGTTAGCTAGTTTTAGAAACTGATTTTCCTGAAGACAGTAGGTACAAGTTCTAAGATCAGATATTTAGTTCCTGGGCTGACTCTTGAAATACAGCCTTAGCTCATTCCTGGAAATGGGCATAATGGTAGTTAATTCTTTAATAGACTTCCCTGGTGGCTCAGTCGGTAAAGTGTCTGCCTGCAATGCAGGAGACCCAGGTTCGATCCCTGCGTTGGGAAGATCCCCTGGAGAAGGAAATGGCAACCCATTCTTTAATCCTTTTTATTGTGTAGTTAATTGTTTAAATGTTGCTTATCGGAGACTGCAACTACTGATATGTAATACTATTTATAACCCTTCTTGTAACTCAGTAAATTGCTAAATTCAGCATGCAGTTAAAGAATACGTTAAAGTATTATCTTGGAATGTCATCACGTTCCGAATTTTTAATTTTTTCCCTTCTTGCCTTTTAG
Seq C2 exon
GGGATTTTATTCACCTCTCCTGAGTGTTTAAAGTGTCCAAATGATTTAATACGCCTGTGGCTTCATGAATCTTCTCGTGTTTATGGAGACAAACTGATAGACACAAAGGACTGTGATTTGTTTCATAAAAAACTGCTGGAAACTGCTAATAAATACTTTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078:ENSBTAT00000061103:49
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(29.2=100)
A:
NA
C2:
PF127752=AAA_7=PD(8.1=40.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATTCAACTTCCCATCGCT
R:
ACAAATCACAGTCCTTTGTGTCT
Band lengths:
344-1987
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]