HsaINT1011341 @ hg38
Intron Retention
Gene
ENSG00000105877 | DNAH11
Description
dynein axonemal heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr7:21741927-21744599:+
Coord C1 exon
chr7:21741927-21742166
Coord A exon
chr7:21742167-21744437
Coord C2 exon
chr7:21744438-21744599
Length
2271 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
TCCCCATTCTTGCCTTGTAGGGG
3' ss Score
10.31
Exon sequences
Seq C1 exon
AGACATTTCACAGTGTTTGCATTCAATTTTCCATCTTTGGATGCACTAAACACCATCTATGGCCAAATCTTTAGCTTCCATTTCCAACAGCAAGCATTTGCTCCATCAATTCTCAGGAGTGGCCCCACTTTGATCCAGGCAACAATAGCATTCCATCAGACAATGATGTGTAACTTTTTACCCACGGCTATTAAATTCCACTACATCTTTAATCTGAGAGATTTATCAAACGTCTTCCAG
Seq A exon
GTACCTTGACTGCTCTATGTTATGCCTCTTGAGTAGAGAAATAATGATAATACTATGTATTAGCCCATTTTTTATGTCACTATAGAGAAACACCTGAGGCTAGGTAATTTATAAAGAAAAGAGGTTTAATTGGCTTATGGTTCTGCAGGCTGTGCTAGCATGGCCCCAGCATCTGCTTCTGGTGAGGGCCTCAGGAGCTGACAATCGTGGTAGAAGGTGATGGGGAGCCAGCATTTCACATTTTGCATGGCAAGAGCAGGAGCAAGAGAGGGAGTGGAGGCAGGTCCCCAAACTTTTAAACAACCAGATCTTGCATGAACTAACTGAGTGAGAATTCACTTATTACGGAGGGGATGGTGCTAACCATTGATGAAGGATCTGCCCCCATGATCCAGTCACCTCCCACCAGGCCCCACCTCCAACACTGGGAATCGCATTTCAACCTGAGATTTGGAGGGGGCACACATCCAAACCATTACCATACTGTTAACGGTGTTCCTTTATAAAACAGCTTAAAACTATGCTATATACTTTTGTATGTATTCTTTAACTTTACTCATAAACTTCTCAGGAAGTAAGTATGGCAGGTTTATTATTTCCATTTCATCAATGAGAACGGTGCTTCTCCTCAGGTCATATAATGTCTTTGTCTGCGCTTCCGTGACAAAATACCCGAGATTGGGTAATTCATAAATAATAGAATTTTATTTCTCACAGTTCTGGAGGCTGGGAAGTCCATGATTAAGGCACTGGCAGATTCAGTGTCTGGTGAGGGCCTGGTCTCTGCTTCCAAAATGGTGCCTTAAGTGGTGCATCCTCACAGGGCAGAAAGGACAGAGCAAATCGGGCAAATGCCCAGCACCCCTTTCATTAGATCACGTTGCCCTCATGACAGTCACCTCCTAAAGGCCTCACCTCTTAATATTGTTACATGGGCAATTAAGTTTCAAGACATGAATTGTAGGGGCCGTTCAGGCCATGGCATATGGTGACTTGGCAGTGGAAGCAAAGGTAGATGTCTGGGCTCTTTAGATTGAGTGAGTGAGTGCTTACTGTTTTGAGTGCCAAGTAAGAAGGATAAATGATCATGTGTTTGCATAAGGCACTTATGTGTGATTTTAAACATATATGAAGAGAAATAGCAACTTTTAAATAGTTGGATCATTTTGGTTTAATATTGAAAATTACCTTGCTTACCTGGTAAAAGGACAGTGTTTATGTATTTGACTTAGGAAATTCTGAAGGGGAAATTGAAAGTCTGGAATTATTTTTTTAAATCCGACTAATGTGGTCTACCCTGTACAGTAAAAATGGATGGCTGAAATTTCTTTTGTGACAGAGGTGGTATATTGATGAAATACGAAAACTCCATAGGACCTCTTTATATTTTTGTAACCGTCTTTTCAGTATCACTCCACAACTGCCTCAAAACCATAACACAGCATTAGGCAGTAGCTTCTTATGAACACGGAGCAATTCTTTTCGTGTCTGTGTATCTAGCTCCTGCCAGAAAGATTGCTTAATACCGTGCTGTTTAAAAGCAGAATTTTAATCTCAGAAGGAAAGGGAAGAGAGGTCATAGGTGAAATGGGACGAGAGGACTGCCTGCTCACCCTTCATATCCTGCCTGTCAGCTGCACCTGACACTACCAAATAATTTTTTAGCCTTTTGCAGCTCAGTTCTCCACAACTCCCTTACTGTTCTCCTGTGCATCCAGAGTAAGCTGCCTCTCTCCATGAGGAGTGAGTGCGTGTGAATCTAAGATACTGAAAGCACCATGAGTGAGCAAGGGAGTCACAATGTGTTGGTGCTAGACCCACATCTACCCATGAAGTATGAGTCTGGGCACTTTACTCTTGGTCTTGTATTCTTCATCTGTGAAATGATTAGACTGATATCAAGTGATTTTATAGTAAAAAAAATATGATTCTGTGACTTTCATGTTAGCTGTTTGTACTCTGGTTTTGTAAACTTAGTCCATTGTAAGGCTTAATAGGCTCAAGTACTCAGATGTGATATTTAGTGCCTGTGCTGGCACTTGAAATGGTCTTACTCGCATACCTAAAAATGGGTATAAGCATACTAAAATTTTAAAATATTGCACTTATCAAAGAGTAAACCTACTTTTATACACGAACACGCACATTACTATTGATGATATTTCTTTTAACCATTTGCTAAGTTCACATTTTAGTTTAAAAAGTGTTAAACTCATTTGACATGTCATCAGCCTCTGAATTAAAGGTATTTTCCCCATTCTTGCCTTGTAG
Seq C2 exon
GGGATTTTATTTGCTTCTCCTGAGTGTTTAAAAGGTCCACTTGATTTAATACATCTGTGGCTTCATGAATCTGCCCGTGTTTATGGAGACAAACTGATAGACAAAAAAGATTGTGATTTGTTTCAGAGAAGAATGCTGGAAACTGCTTATAAATATTTTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877:ENST00000409508:49
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(29.2=100)
A:
NA
C2:
PF127752=AAA_7=PD(8.1=40.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains