MmuINT1008735 @ mm10
Intron Retention
Gene
ENSMUSG00000018581 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:118012688-118015531:-
Coord C1 exon
chr12:118015292-118015531
Coord A exon
chr12:118012850-118015291
Coord C2 exon
chr12:118012688-118012849
Length
2442 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
TCCCTATTCCACTTATATAGGGG
3' ss Score
6.83
Exon sequences
Seq C1 exon
AGACATTTCACTGTGTTTGCATTCAACTTTCCATCTTTGGATGCGCTGACCACCATCTATGGTCAGATCTTCAGCTTCTATCTCCAGCAACAAGCATTCTGCCCATCAGTTCTCAGGGCTGGCCCCTCTTTGATCCAGGCAACAATCGCATTTCATCAGATGATGGCAGAGAGCTTTGTGCCTACAGCTATTAAATTCCATTACAATTTTAATCTAAGAGACTTATCAAACATCTTCCAG
Seq A exon
GTACCTCAACTGGCAAACTAGCTTCTTGAGTATCGGAGTAAATCCTGGCATTCATTTATAGAATGATTTCAGTTTCAAACTATGCTTTATTGCCTCATGTGTTTTTCATTTTTACTCATAAACCTCTCTGTGAGGTGACATGACAAGCTGCTCTGTCTTTTTCGTCGGTGAGGTTGGGGTGGAGGAAGTCTCTTCAGGTTGCACTATACATCTGTGCTAATGCAGCAAGGTACCTGAGATTTGGTCATTCAAAAGCAATGCGAATTTATTGTTCTTAGTTCAGTGGTTCTGAGAAGTCTACAGCCGAGGTAGTAGCAAGTTCAACATCTACTACAGGCCTGTTCTGATGGTGCCTTGAACATTGTGTCTGTCCACGGCAGACAGGATATAAGGACACACAGTTAACTGCTCATATGAGGTCACCTCTCTTAGGAAAGACCGCACCTCTTCATACATCCACATTGGCAGTTAAGTACTTTTTCATTTAGTGTGTGGTGGGAGGGCGTGTTCTACACGCTCTTGTGGAGGTCAGATGACAACTTTATGGAGCTAGCTCTCTCCTTTAACCTTTACAAGAGTCCTGGGGCTTCAGATCATCAGGTTTTCACCCACTGATCTGTCTGTCTCACACGCCCCAGGGAGACATACAGACCACGGTAGATAGTGAGTGAACAAAAACAGTAAAGTAGAAATTTGAACTTTGTAAATTAATGGCTTTTTAGGTGTCAAATGAGAGAAATTGGTCATGGTCTTGCATAAAACATCAATGTTATCACTTTAAACACATATTAGACATGGAATTTTAAATTATGGATCATTTTGTTTCATATCAAAAATTATCTTGAATGCATAGTGTGTTAGGGACAGACACAGACTAGGGTTCCATTATCCCTCTCAAAGGCATGCCCTCGTGACCTAAAGTGGGGTGAGGGGCCATTGAGATCCAAACTGTAGCCTGTAGTAAAGGGGGTAATGTTTACTATTAATTATATAATGGAAATTCTAAAGAGGGAATAGAAGTTCTGGAATTTCTAAAGTGGATGTGGCGTACACTACGATGTACAGTGAAGTCCCTGGGAAGTCACCTAAAACTCAAAGTTCTGTTGTGCAGGAGAAAAATGAGAAAACTTCCAAGACTTCTGCAGCTCTCTTTAGAATCACTCCACAACAGCCTCAGAACTTTACCACAGCAGCAGGCAATAGCTCGTGATAACACAGGCTATTTGCTTTCCCATCTGCTTCTCTCTAGCACCTGTCAGAAAGGCTCTGCTTAGTAAAGTCTTGTCTAAAGCAAGTCTTCCCCTTAGCAGAAAAGGTGACCTAGGATATGATCCTGCCTGCTTAGCCTTCAGGTCCAGGCTGACAACTGCATCTGATACCTTCAAACACTGTCAGCCTCTCTCAGGCTGATTCTCCACAGCATCCTCCTGTTCTCATGGGTGGAGAGCAAGCTGGCTACTCTCAGGTCACCGGCACCCAGATGCTGAAGTGCAATGTTGGTGGGCACAGGAGGCATAGTGAATCCATGCTAATCCTGTGTCTACCTTCCAGGATGAGCTACACTTCAGCTTTGGGTATTTTGGTTTTTGTTTTGTTTGTGAAGTAAACGAGTTAGGTTGGCTAGCATCAACCGATTAAAGACAAGGAAACTTTATTCTGATTGTATACTGTTACTTCATTCTGATTGCATTTGGGTTTCATAAAATTCTTTAGAGACTGATATATATATATATATATGCAGAGATATGTCAACTAGCTCCCACTGACTTGAAATAGTTTTAGTTACATTGCTTAAAGTGGTTATGATGAGGGGCCTGGAGAGATGGCTCAGGAGTTAAGAGTACTTGTGGCTCTTGGAGAGGTCCCAGATTCAATTCCTAGCATCATCATGGTGGTTCACAACTATCCATAACTCCAAATCTAAGGAATCTAGCTCCCTCTTCTGAACTCTGAGAATTTTGCTCACACATGGTACACATCCATACAGGCAAAATCCCCATGCATATACAATAATAATTAATCATTTTTTTAAATTCATGTATGATGAGGGATAGAGAGATGACTCAGCATGTGAGAGCACTGGCTGTTCCTCTAGAGGACCCAGGCTCAATTCCCAGTAACCACATCTGGGTCACAACCATCTGTACCTTTAATACCGGACAACCTGATATCATCTTCTGGCCTCCAAAGGCACTAGGCACTCAAGTGGTACACAAAGACACAATTAAAAAAAAAAAAAAAACTGGGTATGATACTAAACTCTCATGCTCCTGTTTATCTGAAATGAGTTTTATTTGCACATGTATATATATACCCACTCCTGCCTGCTTGTTTCTTTCCAATTGCTAAACTCAGTATAGAGTTAAACGAATACTAAAATTATTTATTTAGAATGACACTGTCCTCTGAATTAAAGCTGTGTTCCCTATTCCACTTATATAG
Seq C2 exon
GGGATTTTATTTGCTTCTCCTGAGTGTTTAAAATCCCTGGAAGACTTAGCACGCCTGTGGCTTCATGAAACGTCACGTGTTTATGGAGACAGACTGATAGACACAAACGATTTTGACTTATTTCAGAGGAAAATGCTGGAAACTGCCCATAAGTACTTTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581:ENSMUST00000084806:49
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(29.2=100)
A:
NA
C2:
PF127752=AAA_7=PD(8.1=40.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types