RnoINT0048681 @ rn6
Intron Retention
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145917869-145920658:-
Coord C1 exon
chr6:145920419-145920658
Coord A exon
chr6:145918031-145920418
Coord C2 exon
chr6:145917869-145918030
Length
2388 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
TCCCCATCCCTCTCACACAGGGA
3' ss Score
9.18
Exon sequences
Seq C1 exon
AGACATTTCACCGTGCTCGCATTCAACTTTCCATCTTTGGACACGCTGACCACCATCTACGGTCAGATCTTCAGCTTCTATCTCCAGCAGCAAGCATTCTGCCCGTCGGTCCTCAGGACTGGCCCATCTTTGATCCAGGCAACCATCGCCTTCCATCAGACGATGGCAGAGAACTTTGTGCCCACAGCTATTAAATTCCATTACAATTTTAATCTAAGAGACTTATCAAACATCTTCCAG
Seq A exon
GTACCTCAACTGGCAAGTTAGCCTCTTGAGTATCAGAATAACTTCTGGCATTCATTTATAGAACGAGTTCAGTTTTAAACCATGCTTTGTTGCATCCCGCGACTTTCTCTTTTACTCATAAGCCTCTCTGATAAGTGACATGAAAAGCTGCTGTCTTTGAGATGCTGTCAGTGAGATGGTGGATCTCTTCAGGTCATACTATATATCTGTGCTAAGGTACCTGAGACTTGGTAATTCAAAAGCAATGAGAATGTATCGTTCGTAGTTCAGTGGCGCCGAGAAGTCTGCAGTTGAGGTAGTAGCAAGTTCAGGCATCTACTGAGGGCCTGGTCTGATGGTGCCTTAACCATTGTGTCTCTTTACAGCAGATAGGATAAAAACACAAATGCTGCTCATATGAGGTCACCTCTCTTAGAAGAGGCCCCACCTCTTCATACTTCTACATTGGCAATTAAGTACTTTTTCATTTAGTGAGTGGTGGGAGGGTATGCTCTACACATGCTTGTGGAGGTCAGATGACAACTTTATGGAGCTAATTCTCTCCTCTAGCCTTTATAAGGGCTCTGAGGTTTGAACTGAGGTCATAGGGTTCACTAGCTGATCTCTCTGTCTCCCTGGCCCTGGTTGTTTCAAAACATAAATTTAGGGAGACGTGCAGACCATGGTAGATAGTGAGTTAACAATAAGCAGTAAGTTGAAATTCGAGCTTTATAAATTAATGACTTATTATTTTAAGTGCCAAACAAGAGTAATTGGTCATGTTTTTGCACAAAGCATCAATGTTACCATTTTAAACATATATTAAAATATGAAATTTTAAATCATAGATGATTGGGTTTGATACTGAAAATTATCTCAATTGCATAGTGTGTTAGGGACAGACACAAAGACCAGGGTTCCATTACCCTTCTCAAAGGCATGTCTTAGTGACCTCAAGTGGGGTAAGGTGCCATTGAGATCCAAACTGTAGCCCATAGCAAAAGGGCAACGTTTACTATTAATTATATAAAGGAAATTCTAAAGAGGGAATCTAAGGTCAGAAACTTTTGAAACAGATGTGGTGTTCTCTACTATGTACGGTGAAGTACCTGGGGAGTTGTCTAAGATTCAAAGTTCCGTTGTGCAGGAGAAAAATGAGAAAACTTCCAGGACTTCTACAGCTCTCCTCAGAACCACTCCACAGCAGCCTCAGAGCCCTACCACAGCAGCAGACGATAGCTCATGATAACACCAGCCATTTGCTTTCAGGGCTGCATTCCTAGCACCTGCTAGAAAGGCTCTGCTTAGTAAGGCCTTGTCTAAAGCAATTCTTCCCCTTAGCAGAAAGGGTGACCTAGGATGTGACCCTGACTGCTTAGCTTTCACGTCCAGGCTGCCAACTACATCTGACACCTTCAAACATTGTCAGCCTCTCACAGGTTAATTCTCCACAGCACCCTCCTGTTCTCATGGGTGGAAGCAAGCTGACTGTTCTCAGGTCACCTGCACCCCAGATGCTAAAGGACAGTGTTGGGGGGCACAGGGAGCAGAGTGACTCCCTGCTGGTCCTTGGTTTACCTTCCAAGACGAGATACATTTCAGCTTTGGGTGTTTTGTTTTGTTTTGTTTTGTTTGTGAAGTAAATGGGTTAGATTGGCTTGTATCAAAGGATTAAAAACAAGGAAACTGTATCCTGTTACTTTCATTCTGATTGTACTTTGGTTTCATAAAATCCATTAGAGACTGGGATATATGTGTGTGCAGAGATGTTTCAATGAGCTCCCACTGAGTTACAATAGTTTTAGCTACATTCCTTAAAGTGGTTATGATGAGGGAGCTGGAGAGATGGCTCAGGAGTTAAGAGCACTTGTGGCTCTTGGAGAGATCCCAGGTTCCATTCCTAGCACGAAAATGGTGGTTCACAACTATCTATAACTCCAAATGTCAGGAATGGAGCTCCCTCTTCTGACCTCTGAGAGTTTTGCTACACATCCATACAAGCAAAATACCTATGCATATAAAATAATAATTAATAAATCTTTCTTTAAAGCCGTGTATGATGAGGGATAGAGAGATGACGCAGCATTTGAGAGCACTGGCTGTTCCTCTAGAGGACCCAGGGCTCAATTCCCAGTAACCACATCTGGGTCACAACCATCTGTAACTCTAGTACCAGGGGAACCTGCTATCATCTTCTGGCCTTTTATAAATGGGTACCATACTAAACTCTCATGTTCTTGCTTATCTGAAATGAGTTTTATTTGCAAATGTGTATACTTACCTGCCCCTGTCTGTCTGTTCCTTTCTGATTGCTAAACACGGTGTAGAGTTAAACAAATACTAAAATTGCCTATTTAGGACAACACTGTCCTCTGAATTAAAGGTGCGTTCCCCATCCCTCTCACACAG
Seq C2 exon
GGAATTCTGTTTGCCTCTCCTGAGTGTTTAAAATGCCCAGAAGACTTAGCACGCCTGTGGCTTCATGAAACATCACGTGTTTATGGAGACAGACTGGTAGACGCAAACGATTCCGACTTATTTCAGAGGAAAATGCTGGAAGCTGCCCATAAGTACTTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451:ENSRNOT00000007233:56
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(29.2=100)
A:
NA
C2:
PF127752=AAA_7=PD(8.1=40.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]