DreINT0058336 @ danRer10
Intron Retention
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10386854-10387270:-
Coord C1 exon
chr6:10387157-10387270
Coord A exon
chr6:10386998-10387156
Coord C2 exon
chr6:10386854-10386997
Length
159 bp
Sequences
Splice sites
5' ss Seq
AGGGTCTGT
5' ss Score
2.7
3' ss Seq
TTTTTTTTGTGTGTGAATAGCTG
3' ss Score
7.94
Exon sequences
Seq C1 exon
GTGGAAGCGATCCAAGCAGAAGTGACCAAACAGCAGCAGGAGACGGAAGCTGACCTGGAGAAAGCCGAGCCAGCTCTACAGGCAGCAAATGCAGCCCTCAACACACTCAACAGG
Seq A exon
GTCTGTTTTTTCGTCTATATCCAGTGTGTTTGACTTAACTTTGGGCACTAATGTGTGTTTTCTCTCTACTGAATCATCCTCTCACATATAATCTAAATGCCCGGTTTTGATGAGCATTTTGTTTAAAGTAGTTTGTGCATTTTTTTTGTGTGTGAATAG
Seq C2 exon
CTGAATCTGACAGAGCTGCGGACGTTTCCGAATCCTCCTGCCATCGTATCGAATGTGACTGCAGCTGTTTTGGTGCTCTTGTCTCCTAATGGCCGTATCCCTAAAGACCGCAGCTGGAAAGCATCTAAAGTTGTCATGAGTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630:ENSDART00000150908:51
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.553 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(10.7=100)
A:
NA
C2:
PF127772=MT=FE(13.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGATCCAAGCAGAAGTGAC
R:
TGACAACTTTAGATGCTTTCCAG
Band lengths:
245-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]