GgaINT1011524 @ galGal4
Intron Retention
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10089287-10089684:+
Coord C1 exon
chr18:10089287-10089382
Coord A exon
chr18:10089383-10089466
Coord C2 exon
chr18:10089467-10089684
Length
84 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
GCCCCGTGCTCCCTTCCCAGAAC
3' ss Score
9.98
Exon sequences
Seq C1 exon
AACGTGGCTGAGAAGCAGCGAGCCTGCGAGACCGACCTGGCCAAGGCCGAGCCCGCGCTCATCGCCGCGCAGGAAGCCCTCGACACGCTCAACAAG
Seq A exon
GTACGGGAGAGCGCAGCTCTGCGGCTGCGGGCCCCCGGGTGCCCCATGCCCGGCGGTGCTCAGCGCCCCGTGCTCCCTTCCCAG
Seq C2 exon
AACAACCTGACGGAGCTGAAGTCCTTCGGGTCCCCCCCCCAAGCGGTGGTGAACGTCACGGCGGCCGTGATGATCCTGACGGCTCCGCACGGCAAGATTCCCAAGGACAGGAGCTGGAAGGCGGCCAAGATCATGATGGGGAAAGTGGACACTTTCCTCGATGCCTTGAAGAAGTTCGACAAGGAGCACATCCCCGAGGCGTGTCTCAAGGAGTTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106:ENSGALT00000011513:58
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(9.0=100)
A:
NA
C2:
PF127772=MT=FE(20.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCGACACGCTCAACAAG
R:
AGTGTCCACTTTCCCCATCATG
Band lengths:
173-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]