RnoINT0048828 @ rn6
Intron Retention
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107062872-107063268:-
Coord C1 exon
chr10:107063173-107063268
Coord A exon
chr10:107063090-107063172
Coord C2 exon
chr10:107062872-107063089
Length
83 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACA
5' ss Score
5.19
3' ss Seq
TTCTGTGCTCGTCCCCGTAGAAC
3' ss Score
11.99
Exon sequences
Seq C1 exon
AACGTTACTGAGAAACAGAAAGCCTGTGAAACAGACCTGGCCAAGGCAGAACCAGCCCTCTTGGCCGCACAAGAGGCCCTGGATACCCTGAACAAG
Seq A exon
GTGACACACAGGAAGTGGAGAGAAAAGGGGCTGGGATGGCCACGTGGCGTTCGGGGGTGACAGTTCTGTGCTCGTCCCCGTAG
Seq C2 exon
AACAACCTGACAGAGCTGAAGTCCTTCGGATCCCCACCAGATGCCGTGGTCAACGTCACAGCCGCTGTCATGATCCTGACGGCGCCTGGGGGCAAGATCCCCAAGGACAAGAGCTGGAAGGCTGCCAAGATCATGATGGGCAAGGTGGACACATTCCTCGACTCGCTGAAGAGGTTCGACAAGGAACACATCCCGGAAGCCTGCCTAAAGGCCTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028:ENSRNOT00000004035:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(9.0=100)
A:
NA
C2:
PF127772=MT=FE(20.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAAACAGACCTGGCCAAG
R:
CTTGTCCTTGGGGATCTTGCC
Band lengths:
183-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]