BtaINT0050375 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54381115-54381565:+
Coord C1 exon
chr19:54381115-54381210
Coord A exon
chr19:54381211-54381347
Coord C2 exon
chr19:54381348-54381565
Length
137 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CCGTCCACCTGTCTCTGCAGAAC
3' ss Score
10.25
Exon sequences
Seq C1 exon
AATGTCACCGAGAAACAAAAGGCCTGTGAAACGGACCTGGCCAAGGCAGAGCCGGCCCTGCTGGCCGCGCAAGAGGCTCTTGACACCCTGAACAAG
Seq A exon
GTGAGGGCTGGAGGAGGAGGAAGAATCAGGGACCGGGACCCCCAAGCTGAGAGGAGATGCTGTGGGGTCATCGCCAGGACCTCCCGGTCCTGCTCGGGGCTAAATCCCCACTCAGGTCCGTCCACCTGTCTCTGCAG
Seq C2 exon
AACAACCTGACGGAGCTGAAGTCCTTCGGGTCCCCCCCGGATGCCGTGGTCAACGTCACGGCCGCTGTGATGATTCTGACCGCACCTGGGGGCAAGATCCCCAAGGACAAGAGCTGGAAAGCTGCGAAAATCATGATGGGCAAGGTGGACACCTTCCTGGACTCCTTGAAAAAGTTCGACAAGGAGCACATCCCCGAGGCCTGCCTGAAAGCGTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920:ENSBTAT00000022637:58
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(9.0=100)
A:
NA
C2:
PF127772=MT=FE(20.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAAGGCCTGTGAAACGGA
R:
TCAAGGAGTCCAGGAAGGTGT
Band lengths:
251-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development