MmuINT0050781 @ mm10
Intron Retention
Gene
ENSMUSG00000033987 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:118052631-118053025:-
Coord C1 exon
chr11:118052930-118053025
Coord A exon
chr11:118052849-118052929
Coord C2 exon
chr11:118052631-118052848
Length
81 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACA
5' ss Score
5.19
3' ss Seq
TCATGTGCTTGTCTCTGCAGAAC
3' ss Score
11.19
Exon sequences
Seq C1 exon
AATGTTACTGAGAAACAGAAAGCCTGTGAAACAGACCTGGCCAAGGCCGAGCCAGCGCTCTTGGCAGCACAAGAGGCCCTGGACACCCTGAACAAG
Seq A exon
GTGACACGGGAAGTGGAAAGAAAAGGGGCTGGGGTGGTCATGTGGTGTTCAGGGGTGACGGTCATGTGCTTGTCTCTGCAG
Seq C2 exon
AACAACCTGACCGAGCTGAAGTCCTTCGGATCCCCGCCAGACGCTGTGGTCAACGTCACAGCTGCTGTCATGATCCTGACAGCGCCTGGGGGCAAGATCCCCAAGGACAAGAGCTGGAAGGCTGCGAAGATCATGATGGGCAAGGTGGACACATTCCTGGACTCGCTGAAGAAGTTCGACAAGGAACACATCCCCGAGGCCTGCCTAAAGGCCTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987:ENSMUST00000132685:59
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(9.0=100)
A:
NA
C2:
PF127772=MT=FE(20.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAAACAGACCTGGCCAAG
R:
CTTGTCCTTGGGGATCTTGCC
Band lengths:
183-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types