MmuINT0050781 @ mm9
Intron Retention
Gene
ENSMUSG00000033987 | Dnahc17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:117913945-117914339:-
Coord C1 exon
chr11:117914244-117914339
Coord A exon
chr11:117914163-117914243
Coord C2 exon
chr11:117913945-117914162
Length
81 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACA
5' ss Score
5.19
3' ss Seq
TCATGTGCTTGTCTCTGCAGAAC
3' ss Score
11.19
Exon sequences
Seq C1 exon
AATGTTACTGAGAAACAGAAAGCCTGTGAAACAGACCTGGCCAAGGCCGAGCCAGCGCTCTTGGCAGCACAAGAGGCCCTGGACACCCTGAACAAG
Seq A exon
GTGACACGGGAAGTGGAAAGAAAAGGGGCTGGGGTGGTCATGTGGTGTTCAGGGGTGACGGTCATGTGCTTGTCTCTGCAG
Seq C2 exon
AACAACCTGACCGAGCTGAAGTCCTTCGGATCCCCGCCAGACGCTGTGGTCAACGTCACAGCTGCTGTCATGATCCTGACAGCGCCTGGGGGCAAGATCCCCAAGGACAAGAGCTGGAAGGCTGCGAAGATCATGATGGGCAAGGTGGACACATTCCTGGACTCGCTGAAGAAGTTCGACAAGGAACACATCCCCGAGGCCTGCCTAAAGGCCTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-Dnahc17:NM_001167746:59
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.001
Domain overlap (PFAM):
C1:
PF127772=MT=FE(9.0=100)
A:
NA
C2:
PF127772=MT=PD(39.5=35.6),PF127772=MT=PU(32.4=61.4)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAAACAGACCTGGCCAAG
R:
CTTGTCCTTGGGGATCTTGCC
Band lengths:
183-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: