DreINT0058341 @ danRer10
Intron Retention
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10376366-10379112:-
Coord C1 exon
chr6:10378939-10379112
Coord A exon
chr6:10376602-10378938
Coord C2 exon
chr6:10376366-10376601
Length
2337 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
TCTTTCTGTTTCACTTTCAGGTG
3' ss Score
14.12
Exon sequences
Seq C1 exon
TCAGAAAACATACGCTGGGCTCATTCTGTGGCTCAGTACCGTGAACAGGAATCAACTCTTTGTGGAGACGTTCTCCTCACTGCGGCCTTCATCTCTTATGCTGGATCTTTCTCAAAGAGATACAGATATGAGTTGCTCCATAACCTCTGGATGCCCTATCTCCGTGCACAAAAG
Seq A exon
GTAACTGTGTGTCACTGTCATTCCGTTTATCTTGGGATCCCATTTGGAATTGCATGTTTTAAACAATTCTTATACTTAACCTGATCTTATATTGACAAACTAAGAATAGTTGGTAAAAGCTCTAAGTGTGTACTTTTCATATTTGACCATTTTTATGCAGGAAATATTGTTTTGACAATAATTTATTAATGTGTAAGAGAAGGTAGCAGGAAAAAGCCAATAAACACTTACAATCACTTAAACTTCAGTTTTACTGTATGTTAATAGTCTAAACAAAATATATTTTCTTGTATTTCTATCAAAATATTTAAGATTTAATTGAAATTTAATATGAAGTGATGGTTACCAAGTGTCCTTTAGGAATCATCAATTAGTCATAAATGTGGTATTTGTTGGTATAGGAGCTCACAAAAACCTGAAAAAATATTAGTGATGTCAGTTACAGATTTGGAACTTTTTGAGACCTCAGGCTTTTATTTTATATAATTTTAGGGTGAACCAAATTTTAATTTCTTGCATTTTTTTTTTAAATATACAGTCGGGCCCGCAATTATTCACATCCTCTGCAAATTCGGACTGCCACTTCTTATTCAAAGTTGTTACGCCCCGTGTGGCTCTGAGGATGAAAAAGGGCTTAACATAATTATGACGACCCAATATTTTAAGAATTCCTCTGAGACGTTAGCTGCTATGAATCGACACAGACAACGACGTGGCAAAAAGTGGTTGGCTTTATTTACAGTAAAGATGAAGGAAAAGAATATTCATTCATTCATTCTTTCATTTTCTTTTCGGCTTAGTCCCTTTATTAATCCGGGGCCTCCACAGCAGAATAACTGCCAACTTACCCAGCATGTTTTTTTTCGCAGCGGATGCCCTTCCAGCTGCAACCCATCTCTGGGAAACATTCACACACACTCATTCACACTCATACACTACGGACAAATTAGTCTACCCAATTTACTTGTACCGCATGTCTTTGGACTGTGGGGGGAACCGGAGCACCCAGGGGAAACCCACGCAAACGCAGGAAGAACATGCAAACTTCACACAAAAACGCCAACTTACCCAGTCGAGGCTCGAACCAGCGACCTTCTTGCTGTGAGGCGACAGCACTACCTACTGCACCACCGTGTCGCCAAAGAATATTTAAATCACTCAAAATATATATTTACAAATGTGTACATTAAATGCAAAATAAAGTAAACAATCAAACCTGATAGGGGGAAGGAAAATAAGCGGTGCAAAATCAAAGGAACAAACATACACAGAGTAGCACCTGCTTCCGATCTAGTGGATTAGCAGAGAATCAATTACGTGTGTGTAAAAATGTCACGTGACGTACTTCACTTTCACTTCCTTTTTAGTAGATTTAAGCAAGTTTAGTATGGGACGTTCTGAACAGATGTACAACTCAAAAAACTCTTTAAAGTGAACCAGAGAACAAGACAGGCACAAATGTCACACAGAAATAAACAAGAATACGCCCCCCCCTCCTCTGATTGGTCCACTCGTGAGAACTCCTCGAGCCGATCGGAACACCTAGATTTTAGAAGAACAGCAGACTGCAAATAAAAACGGAAAGGGGAGAAGGGGACCACAGAGCAACACCCCTAGGCATGTAACAAAAGGTAAATAAAAGTGGAGAATTTCTTTCCCAACAATGAGGCCTCTTATACATTGTCTTATTATCTTTTTGGAGAAAAAAAACAAAACTTTTTTTAGCCATAAAACAACTTGCTGGTTGAATAAATGTTACTTTAAGTTAGAATTGGCCAGGGGTATGAATAGTTTCATGCTTGACTTTATAACTTTTTCTAATTTTGTTTTAGTCCCTTCTTTAATACAAGAACAGAATAAGGATTATATTCAAAAGCGCTTCAGAATTTTGTTAATTTGAATTTTGAATGATTACTTAAAGGTAGAGTCACCCCAAAATGAAAGTTTAGAATTTCTTTTTTTTTTTTAAACAAAAAAGCTGATGTTTAGAAAAATGTTATAAACAATAGCCATTGACATTCATAGACGAAAAAGAAAGTCATTTGGAAGTCAGTTGCTTTCTGTTTTCAACATTCTTCAAAATATCTTCTTTTGCCTTTAACCGAATAAACCAACAGGCTTGGAACAAGTAGAGGGAGAGTAAATATGGATGTAATAATAGATATTATTTTGCATTAAATATACACAAATATCTTTTTTTTATTTTTCATTTGATAGTTTTTTCTTTGTTGTGAAATGAGTATCAATGCTTAATAACGGTTAAGCATTCTGTATGAGGAATGAAGTAGAAATAGAACAGTCGAAATCTCTGTTTTTCTCTTTCTGTTTCACTTTCAG
Seq C2 exon
GTGCCTATTCCTATGTCGGAGGGCTCAGATCCCATCTCCATGTTAACAGATGATGCTACTATTGCTAAGTGGAATAACGAGGGTTTGCCGGGTGATAAGATGTCCACTCAGAACGCCACTATACTGACCAACTGCGAGCGCTGGCCTCTGCTCATTGACCCCCAGCTGCAGGGCATTAAATGGCTCAAGAGTCGCTACGGCAATAGCCTGAAAGTCATTAACCTCAGTCAGAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630:ENSDART00000150908:56
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(15.4=91.4),PF083176=Spc7=PD(13.0=24.1)
A:
NA
C2:
PF127812=AAA_9=PU(28.5=82.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]