DreINT0058354 @ danRer10
Intron Retention
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10358308-10358788:-
Coord C1 exon
chr6:10358597-10358788
Coord A exon
chr6:10358428-10358596
Coord C2 exon
chr6:10358308-10358427
Length
169 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
AACAGACTTCTTTTACCCAGGTG
3' ss Score
5.58
Exon sequences
Seq C1 exon
GACATTCTGGACCAGTGTTCCCGTGAGCAGGAGTTTAAGACCATCCTGTTCTCGCTGTGTTATTTCCACGCCTGTGTGGCTGAGAGACGCAAATTTGGACCGCAGGGCTGGAACAGGAAGTACCCATTCAACACCGGAGATCTCACCATATCAGTCAACGTGCTCTACAACTACCTAGAAGCAAACTCACAG
Seq A exon
GTGTGCAATTAACCACAGGACAAACACTGAGCTTCCTCTGAGGGATAAAGACAGCTCTTAAAACCAAACTTCATTCCAATCTCAAGAGGCGTTTTTTTAGCCTCGCTAGGAACATTGTGATCTGTCTGTATTTAATGCAGAGCAGTGTAAACAGACTTCTTTTACCCAG
Seq C2 exon
GTGCCGTGGGAAGACCTTCGCTACTTGTTTGGTGAGATCATGTATGGAGGCCACATTACCGATGACTGGGACAGGAGACTGTGCAGAACTTACCTGGAAGAGTACATGCAGCCTAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630:ENSDART00000150908:68
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.9=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(5.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCTGGACCAGTGTTCCCG
R:
GTCATCGGTAATGTGGCCTCC
Band lengths:
256-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]