DreINT0058824 @ danRer10
Intron Retention
Gene
ENSDARG00000069937 | dnm2a
Description
dynamin 2a [Source:ZFIN;Acc:ZDB-GENE-050913-84]
Coordinates
chr3:50369369-50371226:+
Coord C1 exon
chr3:50369369-50369439
Coord A exon
chr3:50369440-50371177
Coord C2 exon
chr3:50371178-50371226
Length
1738 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGT
5' ss Score
6.93
3' ss Seq
TATGTTTCCGCCACCTGCAGTGC
3' ss Score
7.73
Exon sequences
Seq C1 exon
GTTCTTTTGCTGATTGACACTGAGCTGTCATACATCAACACCAACCACGAGGACTTCATTGGATTTGCAAA
Seq A exon
GTATGTGTTGCATTCAGTGCAGTCATTTTTTTTTTTTTTTGGCTTTTGTTTTGTTTCTTACCAGGAGGCTTGCGCCCTAACCATAGTGCAGTGCAAGTCTGGCCCACAGCGCAGTTTAGGAATGGGTCATATGGTCAACATTTACATCACATGATAATTAGGGTAATTTGTCTCAAGCCACATATATAATAGCAAAATAAAATATAATAGGTGTCTTAATCTAAACTCAATCTTGCTAAGCTACAAAGAATTATTAGGCAAATTTAGGCAAAAAAATAGCTAATTTAATTAATGTTAATTTTAAAACAGTAGCCTGTTTGTATGTAGCCTTCACATGGGTCAGATAGCGAAAACTTCAGTGTGAAGTCAATTTCATTATTATAAATGAAACCAAATTCATTATCGATGTAAAATAAATCAAACTTAATAATGTAATAGGAAATATTTGATTATGTTACTAATTGTTGTTTAAAATATTGTTCAACTTTTTAAACCACTAACAGAGTTGACAATAGCAAAGTTGACATTAGGGCTGCACGATATTGGAAAAAATTGACATTGCGATACTTTTTTCCCTGCGATCTATATTACGATATATATATATATATATATATATATCTGTCTGAAAATGACAGTAATTTAAACGTACCATAAAACTTCTATAAGTGCATACAATTCGACACAACTACACAAGCATCATTTTAACCTTTATAACCAAACGTTAACGTTACTCTGTCAACAATCTATTGTCTTAATTACCACGCTAACAGAGCTATGTAAACAGAGAACAACAGATTGCAGATGTCAATAATGCAGCGGATTATATTGATATACCGATCAAACTCCGCTTTAAGTACGCTACAAGTTTATAAACTGCCTCTGCAACCCAGTTCAGATACAAAAATCTATTTAACAAAAAAAGTAATGCAGTAAAGTATTTTTTTTTTGGTCTGCCGAGCCTTCTCTGTTGCTGTGAGGAGCAACAGCCTGCGTCAGTCACCTTTAACCCCGGCCCCACCCTGCCCCGTTGTGTTAGCAGCTAAATCGAATCCAAAGCATTGGAGTGGTACAAATTGTACAAAAGCATTATTTTCGCTATTTAAAGACATAACAATATATATATATATATATATATATATATATATATATATGTTTTTTTTTATCTGTACTTTGTGTAGCAGTAAAGACATTAATTCAAATCCAAATTCATCTGCCTCTGCACTATTATTAATGCATTGGACTTAACTTAAGTGCACTAAATTAATTTGTGCATGTCTTAGATCTCTCAAACTAAGGTGTACAACTAAAGACTGATAGCATGGCAAATGTCTGCATGCTCAGTTACTGTAGAACCCTCAACAAGAAGGCAAAGGTAGCCTACAGCATCGAGCTTGTGTTAGCCTGCTCGCCCGGCGTGTCGCATGTTGTGAGTGTTGTCAGGCCACCTATGTTAATAGTTCTCATGCCGTCACTTTCAGTCTGGATCTCAGACGGTTGGATGACGGTACCATACCAGGGTACAGCAACAACAGGTGTGCAAGCCACATTTAGTTAATTGATAATCGGACCATTCATCTCTTCCTACCAACTCCTGCTTTAGTTGCAGGATTGTTCCGACCCAGAGCAACAAGGAGGTTTATGCAGTCATCATTTTGCTAATGTGGAATACAAACAATACCATCATCAACATGCAATCAGTGTGTAATCAGTGCTTTCTGTATGTTTCCGCCACCTGCAG
Seq C2 exon
TGCACAGCAAAGGAATATCGTCAACAAGAAGAGGGCCATTCCCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069937:ENSDART00000024031:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(7.8=100)
A:
NA
C2:
PF0103115=Dynamin_M=PD(4.1=70.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]