RnoINT0049841 @ rn6
Intron Retention
Gene
ENSRNOG00000007649 | Dnm2
Description
dynamin 2 [Source:RGD Symbol;Acc:2513]
Coordinates
chr8:22518232-22521943:+
Coord C1 exon
chr8:22518232-22518302
Coord A exon
chr8:22518303-22521891
Coord C2 exon
chr8:22521892-22521943
Length
3589 bp
Sequences
Splice sites
5' ss Seq
CAAGTACGT
5' ss Score
8.4
3' ss Seq
CTTCTCTGCTTCTGTTACAGTGC
3' ss Score
9.92
Exon sequences
Seq C1 exon
ATCCTTCTTCTGATTGACATTGAGCAGTCCTACATCAACACAAACCATGAAGACTTCATTGGATTTGCCAA
Seq A exon
GTACGTATACAGCCATTGTCACAGGGGCAGCACCTATTTCTACCCCCAGCACCAAGACCAAAATCTTCATCTAACTGGTGGGGATGCTGGGCAAAGGGTAGAGCCATCTAGGAATGCTTTGAAGCTTTTCTGTGCTAACTGTGACCTCCGTCACAGTGTTCTCACCTAGCATGTTGTCTGTGGACATCACAGGGACAAAATGTGTGTTCTGTGGCCATTCTCCAGGAAGAGGAAGGCCAGGCAGGTTCATCCCTGCAGGACTTCTCAGAGCTTTTCATAGTCAGAGCCCCTTTCAGGCTCTGCCTTTCACAGACTGTACATATATACATACACACTGTAGATTTAAAACTAGAAACTGGGGCTGGGATGTCTCCATTGTGAGCATGCACAAGATCCTGGATGAGACCACAGGACCAATACAACAGATACCATACCTGGTTGTATTGGTCCTGAGTCAATCATCAGCTCTGGACCAGCTGGGCAAACTTGGGTGCTACTGGGGGTGTTCTGGTGGCTCATGCAGGTTTTCTTAGCTTTGGTCAATAGGACACTGCCGCGCACCAAAAGACATCTCTCTTGTATCCATCTACACTACTGGTGTACTTTCAGGCCAGGTCTACCTGCCCACAGGAAGTCCCTGTGCAAAGACTCACTGTTAAGATAGGTCTGCTCAAGGCTCTTGGAAGTCCTGAGGGTGGCTGTGGGGCCTGACCTTAGGGTTTTTGGAGACTTCCTAAGTGGGAGGGCCTGCTGGGCACAAGGCTTGAACTGTCTGTTGTCTCTGGGCAGATGGATCGTCTGTTCTGAGTGGACACATGGCAGATGAATGAAATGAATGAATGATTGATTAATGAGAAGCCCCTCCCTGAGCACATGTAACCTAAGGCCCTTAGCTGGTAATTTCTTCCCTGGGGTGGGCTGCATCCAAGGGCTGGGGAAGGCAGCCTCTTTAGCCCTGCTCTCCCAGGCCGTGCACGGACAGCGGAATATCCCCCCACCCCCATTGGTTGCTATCAGTTTCCTCATCTCAATGTGTCTGCTTCTCACACTTCATCCACAGTTCCTTCTCACAATCTCTCCTGTTTTTCCTTTGACCACTCCACTTCTTTCTCTGGATTCCGGGGCCTTCCCACTTACCCAGCTGTTTCTATACTGAGGAGCTGGTCACAGGGTGGGTATTGCCTGCTGTGTGCCTTTTTCCCTGGTGTGTGACCCGGGGCGTCCTCCCTGGGGAGCCTCAAACCTGTGGGGGATGTTCCAGAAGCCCTTGAATTACAACAGCCATTCTCTCAACCAGGGCCCCAGCCAGGCCTTGTGAAGAGGACACTGGGTAAGACACCATAGAGCCTGCCCTTGGAGGGCCCACAGACTGGGGAGTAGTGGAAAATAGAACAAAAGCATGATGGGTGAGGCCTGGGGAGATCCTCCCAAAGAAATCATGCAGGGGCAGGCAGGGAGCCTGCACTGGACAGGAAGACCAAGAGGCAGGACACCAGCCAGTAAGGCAGGATACAGACAACATGCCCCTCACCATTAAGAGCCCGAAGCCTGAGGAGATGAGTTTACATTCCCTGACATGGTGCCCAGAGCCTCTGGTTAGGGCCAGGGAGAGGCATCACCACCTTGGCTGCTATTAAAGGGAGGCACAAAGCACTTACAGCACATCAGGGCCCTTGTCACCATGCTGTAAATGATGGCTTAGCCAGCCACACCTTCGTCAGTATGGATCATTACAGACAGCCCAGAGGAGAAGCCCCATTGGGGCTGCTGGCGTGGCGCTGTTGGTAGAGCACTTGCTTAGCATGCATGAAGTCCAGCACCAAATCAAAGGGGTGTGATAGCCCACACCCATCATCCCACCACAAGGGACCCACAACAGGACAGTTGGTCCAAAGTCATCATCCTTGGTTATATATCTGAAGTAGAAGCCAGCCAGGAACACAGGAAACCCTCCCTCCATCAAAAAAAAAAAAAAAAGTGCCTTAGCAAGTGAAGGTTCGTGAACAGCTGGACACCCATGAGCACAGCGCTATGCCCTCCCAAGAATAAAGATAAAAAAAATGGAGCCTGGGATAGTAGTGTTAGAAGAGCACCAAGGGGAAGTTTACGAGTAAAGCGCCTGTTTCTAAACACACTTGAGCTCCTTAGCTAGCCCAGCCCAGATGCAGACTCTCGATCCTCTGCCTTAGCCTCCAGTCCTGGGTCTCTGGCTTGCACTCCCTTTGAGTGGTAGGCAAAACCTCAGAGCAGAGCAGCTGTGATGAAACCACGTGTGTTGCTATTTGTATCTTTCTGCAGTTTCCAGCTAGAGCAGTAAGCTGAACACTGGCTGCTCCTGCAGAGGAACTGGGTTCTGTTCCCAGAACCCATCAGGTGGCTCACGACCACCTGCCACTCTGGGCCTCCAGGCACACCTGCACATGTGCGGTGCACATAAACTCATGCAGGCAGGCACACACTGACATACACACACACACAATGCATACACACGTACCCCCCAACACACATACACACGTACCCCCCCACACACACATACACACACACACATGCATAGACTTGCACCCCCCACACACACACGTACCCACACACACACACATAGACTTGCACCCCCCCCACACACACACATACACATCTTCTTAAAAAAGAAGAAAATGAAAGCACAAGAGAGAAGCGAGTGGCAGGACACAGTTGCTTTGAGGCGGTGAGAACATTAATTGGGTTAGAGCAGAGTATGGCTCAGAAGCAACGAGGAGAGTGGTGGGTAGCTATAGGGAAGGATGGTGTGGCCTGCCTAGAGCACTGACTGCACAGTGCTTAGCCCCAAGCACGCACTCCCCAGCACTTCACATACTGCATATGAGGGCAGCCAGGAACCCAGAGGCCCTACCTCAGAGCAGTTCATAAACCCCATAGTGTACAGCCCCAGCACTTGGGAGGCTGAGGCAGTTACTTGCCTGTCAGTAACTGTCCAGCCTGGTCTACATTGAGATCTAGGACAGCCAGGGCTACGTAGTGAGGAAGAGGGGGAGAGAGGAAGCTAGCCCAGCATGCACATGCAAGCCTTGTATTTGGTCTGCTGCATCCCTGTTTAAAAAGGGGAGGCGCAGAGTGACTGCTGCTGAGGGGACATGCAGGAACCTCCCATAATGGGCTTGAGTCAGGTTCTTCTAGCCAGCCGTTTGGCCAGTGTAAGCCCAGGACTTCAGGACTGATGAAGGGTCAGTGGTGGGAAGAGAACATAAAGAAGCCTCAGGTATGTTGTGTTCAGGGTCCCCTGGAACCAGCTCCCTGTCCCATTCCCCTGCATCTCACAACTCTTCTCTGGCGCTCTAACTTTCAGTGACTTGTGGGAAATAGCTGGTGCTTCTGGAGTGGCTGTGAAAGGGTTCTAGAAACCAGGGTTTGTCAGACACACTTCTCTTATTTCATGCGCTCTCGCTGGTGTCTATGTACAGGAGCCATGTCCTTGCCTCTGCCCTTAGTGGGTCAGTGGGCCCCTAGGGAAAGAACCTGAGCCCCGGCCACCAGGGCCTCTCTTTACCTCCCTCCCACATCTCCTCTGAATGTGCCTTCTCTGCTTCTGTTACAG
Seq C2 exon
TGCCCAGCAGAGGAGCACGCAGCTGAACAAGAAGAGGGCCATACCTAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007649:ENSRNOT00000010947:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=NA C2=0.185
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(7.8=100)
A:
NA
C2:
PF0103115=Dynamin_M=PD(4.1=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]