DreINT0059694 @ danRer10
Intron Retention
Gene
ENSDARG00000079420 | dpp4
Description
dipeptidyl-peptidase 4 [Source:ZFIN;Acc:ZDB-GENE-081104-277]
Coordinates
chr22:11606054-11606306:-
Coord C1 exon
chr22:11606208-11606306
Coord A exon
chr22:11606124-11606207
Coord C2 exon
chr22:11606054-11606123
Length
84 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
3' ss Seq
TTATTTTCGTTTCCCCTCAGACC
3' ss Score
10.99
Exon sequences
Seq C1 exon
AGTTAAGAGTTCTTGAAAACAACAGCGTACTGGAACATAAACTGCAGGAAATCGCAATGCCATCAAATATGTACGGCAAGCTGAAGATCGGAGAGTTCG
Seq A exon
GTAAGACCAGAAAAGTGGGTTTGAAACAAATAACGAAAATAAGTTTGTTCTAAACCCTAATCTGTTATTTTCGTTTCCCCTCAG
Seq C2 exon
ACCTCTGGTACCAGATGATTCTGCCTCCCAGATTCGACAAATCCAAAAAATATCCTCTTCTTATTGACGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079420:ENSDART00000109596:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTAAGAGTTCTTGAAAACAACAGCG
R:
TGGATTTGTCGAATCTGGGAGG
Band lengths:
143-227
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]