GgaINT0046625 @ galGal4
Intron Retention
Gene
ENSGALG00000011099 | FAP
Description
seprase [Source:RefSeq peptide;Acc:NP_001180568]
Coordinates
chr7:20600582-20601509:+
Coord C1 exon
chr7:20600582-20600680
Coord A exon
chr7:20600681-20601439
Coord C2 exon
chr7:20601440-20601509
Length
759 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGA
5' ss Score
5.17
3' ss Seq
CTTTGATGTGTCTCTTCTAGCTT
3' ss Score
9.77
Exon sequences
Seq C1 exon
AGCTCAGAATATTAGAGGACAATCAAGAATTGCAGTCTGCTTTGCAAGAGATCATACTGCCAAAAGAAGAAATTAATAAACTTGAAGTGGATGGTATAA
Seq A exon
GTAAGAATTATACATTTTTGTTATATTTTTTATTCCTAACTTTTTTATTTTGCCTTCATTTTGTTATAGTAAGTATAATCTTTTCATAGATCAAACTTGTTAGCACGTTAGATTGGACATCAGACCCTCATTCTGCCTTTTCTGACAGTAACCGCTGTATCTGTGCCTCAGTGTACCTATAAATAAAGTAAAAGTTAAAACACATTTCTTCTTCATAATGTAATTAAAACAAAAAAACCAAAACAATATTTCTGTAGATTTCTGTAGTGTTTGAATATCACATAGAAACATTACAGTATGGAGTTAATAAAAAGTGAAACATAAACTGCGATTTATGTGTTATATTGACTTGCATACACTGTTGTTTTTCTTAGTAACTTTACAAATAATATTCCATAGTAGTGAATCAGTGTAATGTTTCCAAAACTCGTTTCTCAAAATCTTAATAACAGTTGTACTCCTAATTGTGTATTTTTAGACACCAGAAAAACTAGAAACCAACTGCTAGGTGAAGTCATAACTTTATACCTGACATAATTTAAATAATAAAAATGGGCACTTGTTTTTTTTCAAAATTATTTCTAAACAGTTCAGCATAAACAGTTACTTGTATGAGTTTTGTGGTTTACTGTTTATGTACTCTGTAGTTTGTGCTGATTCATTTTCTATTACTATTGCATTACTATTGCATCAAACTGGGTTGTGCTTGGAGAAATCATTGTAACCATTAATGATATAACTTTGATGTGTCTCTTCTAG
Seq C2 exon
CTTTGTGGTACAAAATGCTTATACCCCCACAATTTGATAGATCCAAGAAGTACCCACTGCTTATTCAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011099:ENSGALT00000018083:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]