RnoINT0059117 @ rn6
Intron Retention
Gene
ENSRNOG00000005679 | Fap
Description
fibroblast activation protein, alpha [Source:RGD Symbol;Acc:621253]
Coordinates
chr3:48484902-48485529:-
Coord C1 exon
chr3:48485431-48485529
Coord A exon
chr3:48484972-48485430
Coord C2 exon
chr3:48484902-48484971
Length
459 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGA
5' ss Score
5.11
3' ss Seq
CCCTTTTTCTGTTTTCAAAGCTT
3' ss Score
8.24
Exon sequences
Seq C1 exon
AAATACAAGTATTAGAAGAGAACAAAGAACTGGAGAACGCTCTGAGAAACATCCAGCTGCCTGCAGTGGAAATTAAGAAGCTTGAAGACGGTGGAATGA
Seq A exon
GTAAGATATTCTAAAAACGTCTCACTTACAGATGTGAAGGTGAACACTTGGCTTGCCTAAAACAAATTACTGAGTTAACGTCATAGTCCAAGCCATATGATGTAAGCTCTCATTTAAAATAACCTTTCCCTGACAATATTCAGTTTTGTTAAACATTTTACTGTGATTATAAATACAGTTGAACGTCTACTTTTCCATAGCTCCCTCTCTACATTGACATTTTTTAAAAAAAAAGAGAGATTATCTAATTTTAATTTTAGAATAGATGCTTGTAGAGCAAGCAAGTATTTTGAGGATTTATAGTCATTTGCAAATTAGACCTGAACGAGGTAATAGGGTCTGTTGAAAATACGTTCTTAGTCCTTAATGATTTCCTGGGTTGCTTTTGTAGTGCACAGTGTTAAAGAAAATAACATGCATGTGATGGAGTAATTATTTTCCCTTTTTCTGTTTTCAAAG
Seq C2 exon
CTTTCTGGTACAAGATGATTCTTCCTCCTCAGTTTGACAGATCAAAGAAGTACCCTCTGCTAATTCAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005679:ENSRNOT00000008148:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]