DreINT0059700 @ danRer10
Intron Retention
Gene
ENSDARG00000079420 | dpp4
Description
dipeptidyl-peptidase 4 [Source:ZFIN;Acc:ZDB-GENE-081104-277]
Coordinates
chr22:11602042-11602329:-
Coord C1 exon
chr22:11602271-11602329
Coord A exon
chr22:11602115-11602270
Coord C2 exon
chr22:11602042-11602114
Length
156 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
GGATGTTATGAATTTTGCAGAAT
3' ss Score
5.22
Exon sequences
Seq C1 exon
ACTCTATCTACACGGAGCGGTACATGCTCACGCCAGCGGAGAATCAGGCATTTTATGAT
Seq A exon
GTAAGTCTTGATCTGGGAAGTTCTAAAATTGTCTAATAAAGTTGCTGTTTTTATTATAATGACGTCAGTGAACGTGAGTCAGTCCTAAAATAACTCACGAGAGGAAAGCACAAGCTCTGCGTCACCAGTGTTTATGGGATGTTATGAATTTTGCAG
Seq C2 exon
AATTCCACAGTGACGGGAAGAGCCAAGAGCTTTAAATCTGTGCAGTATCTGCTGGTGCACGGCACCGCTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079420:ENSDART00000109596:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=FE(9.3=100)
A:
NA
C2:
PF0032616=Peptidase_S9=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTATCTACACGGAGCGGT
R:
TACTGCACAGATTTAAAGCTCTTGG
Band lengths:
106-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]