MmuINT0062450 @ mm10
Intron Retention
Gene
ENSMUSG00000000392 | Fap
Description
fibroblast activation protein [Source:MGI Symbol;Acc:MGI:109608]
Coordinates
chr2:62502800-62503429:-
Coord C1 exon
chr2:62503365-62503429
Coord A exon
chr2:62502873-62503364
Coord C2 exon
chr2:62502800-62502872
Length
492 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
3' ss Seq
TAATTTTTCTTCTTTTCCAGAAT
3' ss Score
10.05
Exon sequences
Seq C1 exon
CATCTATCTACTCAGAGAGATTCATGGGCCTCCCAACAAAGGACGACAATCTCGAACACTATAAA
Seq A exon
GTAAGCATTTCCCATTGTATCTAGGTCACTAATTTATTTCAAACGTGTTAAGTAATTTTAAAACAGTGATTCAGAGTTTGCAAATTCAGTTCTGGATCCCCAGGCAAAAATTATGATCTTTTGTTAACTGCAAAAGCATCACTAGAAAGAAATTTTACTCTTTGAGGATTCTATTCTCTCTCCAATCTAACCTCCCTTTTCTCATCTCTGCTCCCCACCCCCAACGCCTACACAGCTTGAGCGGGTATCATTTATGCCTAAGGTCTCACTCATATGTAACATATGACACATAAACTTTCAGTTTTTCAAACTAAGAATCAGATGGAAGTAATGCAAATGATGATGAAAATGTGTTGCTCTGACTCTTAAATATTTATCAACCAAAGCAATACATAATTTCAGTATTGGTGCGAAGTCCATTGCACAATGATTTAGCTAGTTTTCTATTAGAACTTTGCAGCAACTAAAATGTTAATTTTTCTTCTTTTCCAG
Seq C2 exon
AATTCAACTGTGATGGCAAGAGCAGAATATTTCAGAAATGTAGACTATCTTCTCATCCACGGAACAGCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000392:ENSMUST00000102732:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=PU(40.4=95.0)
A:
NA
C2:
PF0032616=Peptidase_S9=FE(11.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types