HsaINT0061959 @ hg38
Intron Retention
Gene
ENSG00000078098 | FAP
Description
fibroblast activation protein alpha [Source:HGNC Symbol;Acc:HGNC:3590]
Coordinates
chr2:162173149-162173787:-
Coord C1 exon
chr2:162173723-162173787
Coord A exon
chr2:162173222-162173722
Coord C2 exon
chr2:162173149-162173221
Length
501 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
AATTTTTTTCTCTTTTCCAGAAT
3' ss Score
10.93
Exon sequences
Seq C1 exon
CGTCTGTCTACACAGAGAGATTCATGGGTCTCCCAACAAAGGATGATAATCTTGAGCACTATAAG
Seq A exon
GTAAGTGTTTCCATTTTATTTAGGTTAATAATTAATTTCTAATATGCTAAATAACTTAAAAGCAGTAGTTCAGAATTTACAGTTTTAATTCTGGGCCCCCAAGCAAATATCATCTTTTGTTAATTGCAAAACACATCACTAGAAAGGGTTTTACTCCTTTTGGATTCTGTTCTTTCTTTTCCCATCCTCCCTTCCCTAACCTCTCTTTTCCCAATCTTCCTCCCCACCCCCAACCCCTACACAGCTTGAGCGGGCATCATTTATGCCTAAGGTCTCACTCATATGTAACATATGACACATAAACTTTCAGTTTTTCAAACTAAGAATCAGATGGAAGTAATGCAAATGATGATGAAAATGTGTTGCTCTGACTCTTAAATATTTATCAAGCAAAGCAATACATAATTTCAGTATTGGTGCTAAGTCCATTGCACAATGATTTAGCTAGTTTTCTATTAGAACTTGCAGCAACTAAAATGTTAATTTTTTTCTCTTTTCCAG
Seq C2 exon
AATTCAACTGTGATGGCAAGAGCAGAATATTTCAGAAATGTAGACTATCTTCTCATCCACGGAACAGCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078098:ENST00000188790:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=PU(40.4=95.0)
A:
NA
C2:
PF0032616=Peptidase_S9=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development