DreINT0059761 @ danRer10
Intron Retention
Gene
ENSDARG00000027750 | dpp7
Description
dipeptidyl-peptidase 7 [Source:ZFIN;Acc:ZDB-GENE-050306-16]
Coordinates
chr5:28562552-28563907:+
Coord C1 exon
chr5:28562552-28562715
Coord A exon
chr5:28562716-28563771
Coord C2 exon
chr5:28563772-28563907
Length
1056 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATC
5' ss Score
4.41
3' ss Seq
TTATTAAATGTGTTCTTTAGCTA
3' ss Score
6.3
Exon sequences
Seq C1 exon
AGGTACTATGGGAAATCTCTTCCATTTGGGAAGAATTCTTTTAAAATCCCTGAGGTGGGGTTGTTGACGGTGGAGCAGGCCCTCGCAGACTATGCTGTCATGATCACAGAGCTGAAGGAGGAGCTGGGAGGTCAAACATGTCCCGTCATTGTCTTTGGTGGAAG
Seq A exon
GTGATCTTTAGATTTACGTATACTCTGATAGATACATATGGGTCAAAGACAAAACAGGGCTTTCAAGCATCCTAAAAATAGAACTGTAGTGAAGCTTAAAATGTTGTTTTCTGTACATTAATAATTGTCATGTAATTTATTTTTTTAATTTTTAAAGGGGGAAAAGTTTATTGACTGTCGCTGTCATACATTCTTATCACAATTATAGACTGTTAAGCTGTTAAACGGCTTTGCATTGTGAGAATAGTTCATATACTTAATATAATAAAAATCACATCAGAATAAAAATAAATAAAAATCATGTCAGTCATATTTAGAATGACAAAAGACTTCAAGGATCAAAGTTTTGCCCCAAAATACATTTTTATTTTTATTTTAGATCTTTATACTTTACCACTATCCTTGTTATTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTTGCAGATGTTAAGTTGACCAGCCAAACAGCTTTTTGTTTTTATTATAAATGTATTGGAAATTTTGTATTTGACCCATGAATATCCTTATGTCAACCAGCCATCCTATTTTTATTATTATTATTATTTAAAATATTATATTTTTCATTAATAATATTATTTATGATATTAATATGAAAATATTATAACTAAAGAAATTGTAAATGTTTTAATACTACTACTACTACTAATAATAATATTACTACTACTAATAATAACAACAACAACAACAACAACAACAATACTATTACTACTATATAATAATAATAATAATAATAATAATAATAATATTAATAGATAACAATAACAGCAATAATAATAATAATAAAAAACAGCAACAATTATAATAATTATAATAATAATAATTATTATTGTTATTATTATAAACCCCAATAATAATAATAATAATAATAAATATTATTTTTATTATTTTATTTTTATTATTATTATTATTCTCTTTTTTTACTAAATTATTTTAAATGATAAAATAAAAATGAAATAAGGAAATAAATGTAACTAAGTATTAATTAAATAGCAATCTTAATGTTATTAAATGTGTTCTTTAG
Seq C2 exon
CTATGGAGGAATGCTGAGTGTCTACATGAGAATCAGGTACCCCAATATTGTGGCTGGAGCATTAGCCGCTAGCGCCCCCATTCTGTCCACCGCAGGTCTCGGAGACCCTCGACAGTTTTTCCAGGATGTAACTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027750:ENSDART00000037891:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(12.6=100)
A:
NA
C2:
PF055777=Peptidase_S28=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAAGAATTCTTTTAAAATCCCTG
R:
AGCAGTTACATCCTGGAAAAACTGT
Band lengths:
274-1330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]