HsaINT0051830 @ hg38
Intron Retention
Gene
ENSG00000176978 | DPP7
Description
dipeptidyl peptidase 7 [Source:HGNC Symbol;Acc:HGNC:14892]
Coordinates
chr9:137113434-137114028:-
Coord C1 exon
chr9:137113865-137114028
Coord A exon
chr9:137113497-137113864
Coord C2 exon
chr9:137113434-137113496
Length
368 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
ACCCTGTGTCCCTCACCCAGTTA
3' ss Score
7.4
Exon sequences
Seq C1 exon
CGCTACTACGGGAAGTCGCTGCCGTTCGGTGCGCAGTCCACGCAGCGCGGGCACACGGAGCTGCTGACGGTGGAGCAGGCCCTGGCCGACTTCGCAGAGCTGCTCCGCGCGCTACGACGCGACCTCGGGGCCCAGGATGCCCCCGCCATCGCCTTCGGTGGAAG
Seq A exon
GTGGGCGCCTCCCCCGGCCTCCGCACCCCCTCCCTCCCCTGCCCCGACCCAGCGCCCCCAGCCCTTCTCCCCACTCCCCTCTGACTCCCACCGCTGCCTTTTCGTAAGGCCTCAGGCAGTGGTTCCAGGCTTAGTGTTGCCTCCCCCAGGAAGCCCTCCCACCTGTCCTCCCAGCCACCTGCTCAGCTTGGATGTGCGGCCACACTAGCGGCCTTTCCCAGTGAGAGCTGCACCCGCACCTGGCCCAGGGTTGGAATTTGTGGGTCTCAGAAGTGTCGTCCTCCTTGTGGCACCTGTGGGCCCCTGAGGAGGAAAAGAGGAAATGGGGTGTTGGGGGCAGCAGCCCTAACCCTGTGTCCCTCACCCAG
Seq C2 exon
TTATGGGGGGATGCTCAGTGCCTACCTGAGGATGAAGTATCCCCACCTGGTGGCGGGGGCGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176978:ENST00000473703:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.090 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(12.6=100)
A:
NA
C2:
PF055777=Peptidase_S28=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTACGGGAAGTCGCTGCC
R:
CACCAGGTGGGGATACTTCATC
Band lengths:
214-582
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development