HsaEX0020853 @ hg38
Exon Skipping
Gene
ENSG00000176978 | DPP7
Description
dipeptidyl peptidase 7 [Source:HGNC Symbol;Acc:HGNC:14892]
Coordinates
chr9:137112817-137114028:-
Coord C1 exon
chr9:137113865-137114028
Coord A exon
chr9:137113361-137113496
Coord C2 exon
chr9:137112817-137113119
Length
136 bp
Sequences
Splice sites
3' ss Seq
ACCCTGTGTCCCTCACCCAGTTA
3' ss Score
7.4
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
CGCTACTACGGGAAGTCGCTGCCGTTCGGTGCGCAGTCCACGCAGCGCGGGCACACGGAGCTGCTGACGGTGGAGCAGGCCCTGGCCGACTTCGCAGAGCTGCTCCGCGCGCTACGACGCGACCTCGGGGCCCAGGATGCCCCCGCCATCGCCTTCGGTGGAAG
Seq A exon
TTATGGGGGGATGCTCAGTGCCTACCTGAGGATGAAGTATCCCCACCTGGTGGCGGGGGCGCTGGCGGCCAGCGCGCCCGTTCTAGCTGTGGCAGGCCTCGGCGACTCCAACCAGTTCTTCCGGGACGTCACGGCG
Seq C2 exon
CCTACGACACGGTCCGCTGGGAGTTCGGCACCTGCCAGCCGCTGTCAGACGAGAAGGACCTGACCCAGCTCTTCATGTTCGCCCGGAATGCCTTCACCGTGCTGGCCATGATGGACTACCCCTACCCCACTGACTTCCTGGGTCCCCTCCCTGCCAACCCCGTCAAGGTGAGGCGCCGCCTCCCAGGGCGCAGGGAGAGGCCGGCTGGAGTGTCCCGAGGCTGGTGGTCAGCGGCCTGACCCTCATCCTGGGAGCCAGGGAGGCGGAGCTGGTGGAGGGGACCCCGCTGAGTCGCCGCTGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176978_MULTIEX1-1/2=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.090 A=0.000 C2=0.230
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(12.6=100)
A:
PF055777=Peptidase_S28=FE(10.5=100)
C2:
PF055777=Peptidase_S28=FE(12.9=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTACGGGAAGTCGCTGCC
R:
CATTCCGGGCGAACATGAAGA
Band lengths:
252-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development