GgaEX6014638 @ galGal3
Exon Skipping
Gene
ENSGALG00000009105 | DPP7
Description
NA
Coordinates
chr17:691671-696240:+
Coord C1 exon
chr17:691671-691834
Coord A exon
chr17:693641-693776
Coord C2 exon
chr17:696159-696240
Length
136 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTCTCCTGTCCCAGCTA
3' ss Score
9.11
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
AGATACTATGGGAAATCTCTTCCGTTTGGACTTGAGTCAACGCAGCTAAAGAATACTCATCTGCTCACTGTGGAACAAGCCCTTGCTGACTATGCAGTGCTAATTACTGAGCTTAAGCAGCAGTATGGAGCTGCAGGCTGCCCTGTCATTGCTTTCGGAGGCAG
Seq A exon
CTACGGAGGAATGCTGAGTGCCTACATGAGGATGAAATACCCAAACGTTGTGGATGGGGCATTGGCTGCCAGCGCTCCTGTGCTGTCTGTGGCTGGGCTTGGAGATCCCACTCAGTTCTTCAGAGATGTAACAGCA
Seq C2 exon
GATTTTCAGAAGTCCATCCCAGGCTGTGTCCCTGCTGTCCAAAGAGCCTTCCAGCAGATCAGGGATCTGTTCCTGAGCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009105-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(12.6=100)
A:
PF055777=Peptidase_S28=FE(10.5=100)
C2:
PF055777=Peptidase_S28=FE(6.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAATCTCTTCCGTTTGGACT
R:
ATCCCTGATCTGCTGGAAGGC
Band lengths:
220-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]