RnoEX6015829 @ rn6
Exon Skipping
Gene
ENSRNOG00000012640 | Dpp7
Description
dipeptidylpeptidase 7 [Source:RGD Symbol;Acc:71073]
Coordinates
chr3:2571643-2572760:-
Coord C1 exon
chr3:2572597-2572760
Coord A exon
chr3:2571915-2572050
Coord C2 exon
chr3:2571643-2571724
Length
136 bp
Sequences
Splice sites
3' ss Seq
GTGTCCTTTCCCCACCCCAGTTA
3' ss Score
7.41
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
CGGTATTATGGGAAATCGCTTCCATTCGGTGTGCAGTCCACACAGCGGGGATACACACAGCTGCTGACTGTGGAGCAGGCGCTGGCTGACTTCGCCGTGCTGCTCCAGGCCCTGCGGCACAATCTTGGGGTCCAGGATGCCCCCACCATAGCCTTTGGAGGGAG
Seq A exon
TTATGGGGGAATGCTGAGCGCCTACATGAGGATGAAGTACCCCCACCTGGTGGCTGGGGCACTGGCGGCCAGCGCTCCTGTTATAGCTGTCGCAGGCCTTGGCAACCCCGACCAATTCTTCCGAGATGTCACAGCG
Seq C2 exon
GACTTCTATGGCCAGAGTCCCAAGTGTGCCCAGGCTGTGCGGGATGCTTTCCAGCAAATCAAAGACTTGTTCCTCCAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012640-'6-12,'6-10,8-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(12.6=100)
A:
PF055777=Peptidase_S28=FE(10.5=100)
C2:
PF055777=Peptidase_S28=FE(6.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTATTATGGGAAATCGCTTC
R:
CTCCCTGGAGGAACAAGTCTT
Band lengths:
246-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]