MmuEX0015608 @ mm10
Exon Skipping
Gene
ENSMUSG00000026958 | Dpp7
Description
dipeptidylpeptidase 7 [Source:MGI Symbol;Acc:MGI:1933213]
Coordinates
chr2:25354741-25355721:-
Coord C1 exon
chr2:25355558-25355721
Coord A exon
chr2:25354893-25355028
Coord C2 exon
chr2:25354741-25354822
Length
136 bp
Sequences
Splice sites
3' ss Seq
TCTGTGCTCTGTACTCCCAGTTA
3' ss Score
7.34
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
CGGTACTATGGGAAATCGCTTCCGTTCGGTGTCCAGTCCACACAGCGGGGATATACACAGCTGCTGACTGTGGAGCAGGCGCTGGCCGACTTTGCTGTGCTGCTCCAGGCCCTGCGGCAGGACCTTGGGGTCCATGATGCCCCCACCATAGCCTTTGGAGGGAG
Seq A exon
TTATGGGGGGATGCTGAGTGCCTACATGAGGATGAAGTACCCCCACCTGGTGGCTGGGGCACTGGCAGCCAGCGCTCCTGTTGTAGCTGTTGCAGGCCTTGGGGACTCCTACCAATTCTTCCGAGATGTCACAGCG
Seq C2 exon
GACTTTTATGGCCAGAGTCCCAAGTGCGCCCAGGCTGTGCGGGATGCCTTTCAGCAAATCAAAGACTTGTTCCTCCAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026958-'6-6,'6-5,9-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(12.6=100)
A:
PF055777=Peptidase_S28=FE(10.5=100)
C2:
PF055777=Peptidase_S28=FE(6.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTACTATGGGAAATCGCTTC
R:
CTCCCTGGAGGAACAAGTCTT
Band lengths:
246-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types