GgaINT0126627 @ galGal4
Intron Retention
Gene
ENSGALG00000009105 | DPP7
Description
dipeptidyl-peptidase 7 [Source:HGNC Symbol;Acc:HGNC:14892]
Coordinates
chr17:311844-313949:+
Coord C1 exon
chr17:311844-312007
Coord A exon
chr17:312008-313813
Coord C2 exon
chr17:313814-313949
Length
1806 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TTTTCTCTCTCCTGTCCCAGCTA
3' ss Score
9.11
Exon sequences
Seq C1 exon
AGATACTATGGGAAATCTCTTCCGTTTGGACTTGAGTCAACGCAGCTAAAGAATACTCATCTGCTCACTGTGGAACAAGCCCTTGCTGACTATGCAGTGCTAATTACTGAGCTTAAGCAGCAGTATGGAGCTGCAGGCTGCCCTGTCATTGCTTTCGGAGGCAG
Seq A exon
GTAAAGGTTGTGTATAGTTGTACCCTTCTCTGCATCCTTTCCCAGCCACAGCTGTGTTATTCTCATAGGTCTGCTTACCTTTAAAGCTTGCTGGAGAGCCAGAGCTCTAAGCTGTTCTGTAGAGAGCAGATGTGTTTGTGGCTGAGCTCCTTGGGGGCTTATCCCCAGGGCCCAGCCAGCTGTCCCATAAAGAATTAGTCTTGACTTGTGATTGCCTTTGAGAATCTTTGCTTTGGATACTGGAAGTTTCTAGGCATCTTCAATGTCAGCCAGAACCCCAGAAGGTGGGAAATTGTACCTGCAGGATCAGAACATTCTACATGGAAAATACAGAAAAATAATAATTGCTAAAAATATTCTTTTGAGAGACCATCTGGCTATTCATTAAGCAGCGTCTTTAGCAGCATGCAGCCATTGTCACTGTAGGCCCCTCTGTAATCCTGCTCTGCACTGTGCTGCTTGGTTGCTCCTGGCTTTCTAGCAGATATCCTTTCCCAGAGTGCTTGCACTGTTTCAAGACAGAGCTGTGTTGGTTTCGTGCACGTCTCTTCCCATGTTTATGTGGAAAGATGCTTCCCTTTAAAAGGTTTTCAATGAATACAAGGGGCTTCTCAGGCACTGCAGGGAGTTAAAAAGCATTCAGTCACAGTTATGCTTCAGCAGACCATGGTGGTGACCGGGCTGTTGATCCCAGTGGTATCTGTACCATGACCACCAGGACAGAGCACAGTGAAACACGTCAGGAGCAGTCCTGGGCAGGGAGGGGTGCGTGCAGTGAGTCCTGCAAGCTCTGAGACTGCAGTTCTTGGTGTGTAAATCAGAGCTAAATATGCAGCAGCCCTGAACAGCACTAAACCTACGTGAAGAATATAAAGGTATAGTAGTGTTGGAGCAGAACGTTTCCACGGGGAAGAAAGTCCCCCTTCAGTTGCTTATAGCTTTGCCAGGCTTTAATCGGTGGAACTGAAATTTCTTGTCAGGTTTCAGCCAAAACCTGTTTCTGAGGGTTGGCTTAGAGAGCAGTCCATTGCTTTACACATGAGTGATGTGGGACTTGGCTACCTCTGAGCTGCGAGTGAAGAGCTCAGAGTCAGACCAGGCACCGTGAGGGTTGGGATGCCCCCAGGAGTGACCTCAGAGTAACTCCTCAGCAGTTTGCATCCGAGTAACTTTTGTGCCCTTGGGTTTATCCAGCAGTCCTCGATACATCTGCAGACCTGTGGCCTCGTGGCTGAAGCTCTCTCGGTGGTTTTGAGATTTCATGTGACCTTTGTTAATGTCTCCCATTCTCTGCTGTGCTGCTGCTACGTGGGCTGCCCGGGATGACCTCCACCCGCCCCTCAGCACTGCAGAGTTGCCTATTCTGTAGTGTTCAGGGATGTCCTCTGCTTGTTAGCCCTTGCTTAGACAATCTTTATAATCCTGCATGGGAGATGTGTCTCTTTCCCCCATTAAGCAATGACACTTGACTTGAGCCCCAGCTGGCTCTGTGCTGAAGCTCTCAGGTCTCAGAATGCAGTGGTGTTAGATATTGGGGCAGCATTTACTTTTGTTTGCAGAAGCAAATTGGGCTGCTGTGTTCCTGCAAGAATTGACTTGAGGGTCTTAGGGGGCAGATAGTAAGAACACAGTGTACCACTCATCAGCCATAACTGGTTCTTTTTTTGTTCTCCACATGAGCGTGGGTTTCCCTAAGCTTCCTGTTGCTCTGGGAGAGGTGAGCTTGTGACTACTGGCCTGAACGTTCAGCTTTATAACATTAACTCTCTGTTAAAGGAAATAACACTTTTCTCTCTCCTGTCCCAG
Seq C2 exon
CTACGGAGGAATGCTGAGTGCCTACATGAGGATGAAATACCCAAACGTTGTGGATGGGGCATTGGCTGCCAGCGCTCCTGTGCTGTCTGTGGCTGGGCTTGGAGATCCCACTCAGTTCTTCAGAGATGTAACAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009105:ENSGALT00000014829:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(12.6=100)
A:
NA
C2:
PF055777=Peptidase_S28=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCTTCCGTTTGGACTTGAGT
R:
TGCTGTTACATCTCTGAAGAACTGA
Band lengths:
286-2092
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]