RnoINT0050876 @ rn6
Intron Retention
Gene
ENSRNOG00000012640 | Dpp7
Description
dipeptidylpeptidase 7 [Source:RGD Symbol;Acc:71073]
Coordinates
chr3:2571915-2572760:-
Coord C1 exon
chr3:2572597-2572760
Coord A exon
chr3:2572051-2572596
Coord C2 exon
chr3:2571915-2572050
Length
546 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
GTGTCCTTTCCCCACCCCAGTTA
3' ss Score
7.41
Exon sequences
Seq C1 exon
CGGTATTATGGGAAATCGCTTCCATTCGGTGTGCAGTCCACACAGCGGGGATACACACAGCTGCTGACTGTGGAGCAGGCGCTGGCTGACTTCGCCGTGCTGCTCCAGGCCCTGCGGCACAATCTTGGGGTCCAGGATGCCCCCACCATAGCCTTTGGAGGGAG
Seq A exon
GTGGGTCCTTGATATCCCTTCAGGACAGATCTGTCCCCACAGGAGATCCTAGAGTCCTACTTACGCCACTCTCATGGCCCCAAGTGGCACCCTATATAAGGAGGGCCAAAGAAATGTCTCTTACATTCTCTGCATCCTCTTTCTAGCTCCAGGGTGCCTAGCCCCATGCATGGAAGGGCTAGGTCTAGCTTTACCTCCTCATGGAAGCCCTCCTTGAGTGGACCTCATAGGCTGTGCATGCTGTGTCACCCACACTAGTGGGACAATCCCTGCTGATATTGTTCAGCAATGTCTTCATTGCTGGGCCAGAGCAGGGCACCCACAGGGCCTTTTCCCAGGGAAGGCCTTGCCCCTGGGATCAAAATGTATGGGCCTGACAGCTTCAGGTCCTTTTTTCCCCACATTTGGGACTCTGGAGCAGGGAAGGAGCAAGGGGATGACACAGGTCTAGCCTAGACACCCCGGCCTGGAGGACAGTGAGACTGCTAGCCTCAGCATGGAGGCCGCTTCCCATAACCACAATCCTGTGTCCTTTCCCCACCCCAG
Seq C2 exon
TTATGGGGGAATGCTGAGCGCCTACATGAGGATGAAGTACCCCCACCTGGTGGCTGGGGCACTGGCGGCCAGCGCTCCTGTTATAGCTGTCGCAGGCCTTGGCAACCCCGACCAATTCTTCCGAGATGTCACAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012640:ENSRNOT00000017271:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(12.6=100)
A:
NA
C2:
PF055777=Peptidase_S28=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTATTATGGGAAATCGCTTC
R:
CGCTGTGACATCTCGGAAGAA
Band lengths:
300-846
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]