DreINT0059763 @ danRer10
Intron Retention
Gene
ENSDARG00000027750 | dpp7
Description
dipeptidyl-peptidase 7 [Source:ZFIN;Acc:ZDB-GENE-050306-16]
Coordinates
chr5:28563999-28564338:+
Coord C1 exon
chr5:28563999-28564080
Coord A exon
chr5:28564081-28564171
Coord C2 exon
chr5:28564172-28564338
Length
91 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCC
5' ss Score
8.33
3' ss Seq
TTCACGTTTGCACCACATAGACT
3' ss Score
3.42
Exon sequences
Seq C1 exon
GACTTTGAGAAGTTCAACCCTGCCTGCAGAAATGCAGTGCAAGGAGCTTTCCAGAAGCTAAACACTTTGGCGCAACAGAAAG
Seq A exon
GTATCCAGCAGCTTTTCTCTCAATATGTGCTCGATGTAATTCCATAAAACTAATTTAATCCTCCTCGATTTTTCACGTTTGCACCACATAG
Seq C2 exon
ACTACATCCGCATCCAGTCTGCTTTCTCTCTGTGTAAAACTCCCTCCTCTCCAAAGGACATTCATCAGCTGAACGGATTCTTACGTAACGCCTTCACCATGATGGCCATGTTGGATTATCCCTACAGCACTCATTTCATGGGCAGCATGCCAGCCTTTCCTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027750:ENSDART00000037891:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(6.3=100)
A:
NA
C2:
PF055777=Peptidase_S28=FE(12.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAAACACTTTGGCGCAACA
R:
TGCCCATGAAATGAGTGCTGT
Band lengths:
170-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]