HsaINT0051832 @ hg19
Intron Retention
Gene
ENSG00000176978 | DPP7
Description
dipeptidyl-peptidase 7 [Source:HGNC Symbol;Acc:14892]
Coordinates
chr9:140007405-140007739:-
Coord C1 exon
chr9:140007658-140007739
Coord A exon
chr9:140007572-140007657
Coord C2 exon
chr9:140007405-140007571
Length
86 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TCTCTGCCCCTTCCACGCAGCCT
3' ss Score
8.86
Exon sequences
Seq C1 exon
GACTTTGAGGGCCAGAGTCCCAAATGCACCCAGGGTGTGCGGGAAGCGTTCCGACAGATCAAGGACTTGTTCCTACAGGGAG
Seq A exon
GTGAGGTCCTCCCACCGCCTCCCACTGCCTGACCCGCCCCAGCGCCAGCTATGCCCAAACTTCAAGTCTCTGCCCCTTCCACGCAG
Seq C2 exon
CCTACGACACGGTCCGCTGGGAGTTCGGCACCTGCCAGCCGCTGTCAGACGAGAAGGACCTGACCCAGCTCTTCATGTTCGCCCGGAATGCCTTCACCGTGCTGGCCATGATGGACTACCCCTACCCCACTGACTTCCTGGGTCCCCTCCCTGCCAACCCCGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176978-DPP7:NM_013379:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.440
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(6.3=100)
A:
NA
C2:
PF055777=Peptidase_S28=PU(71.6=98.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTTCCGACAGATCAAGGAC
R:
GTCAGTGGGGTAGGGGTAGTC
Band lengths:
171-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)