RnoINT0050878 @ rn6
Intron Retention
Gene
ENSRNOG00000012640 | Dpp7
Description
dipeptidylpeptidase 7 [Source:RGD Symbol;Acc:71073]
Coordinates
chr3:2571370-2571724:-
Coord C1 exon
chr3:2571643-2571724
Coord A exon
chr3:2571537-2571642
Coord C2 exon
chr3:2571370-2571536
Length
106 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CCTGGCTTCTCTCTTCCCAGCCT
3' ss Score
8.2
Exon sequences
Seq C1 exon
GACTTCTATGGCCAGAGTCCCAAGTGTGCCCAGGCTGTGCGGGATGCTTTCCAGCAAATCAAAGACTTGTTCCTCCAGGGAG
Seq A exon
GTGAGGAGGTCCTTCTTCACATGCTGTCCCCTTTGGGCATTCATTCTTGCCCTTCATATTTGCCAGCAGTTTCCTCAGCCTTTTCTCCTGGCTTCTCTCTTCCCAG
Seq C2 exon
CCTATGACACCATCAGCCAGAATTTTGGGACCTGCCAATCACTTTCCAGCCCAAAGGACCTGACTCAGCTCTTTGGGTTTGCCCGGAATGCATTTACTGTTCTCGCCATGATGGATTACCCGTACCCTACTAACTTTCTAGGGCCCCTTCCTGCCAACCCTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012640:ENSRNOT00000017271:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(6.3=100)
A:
NA
C2:
PF055777=Peptidase_S28=FE(12.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGCCAGAGTCCCAAGTGT
R:
CTTGACAGGGTTGGCAGGAAG
Band lengths:
243-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]