DreINT0059765 @ danRer10
Intron Retention
Gene
ENSDARG00000027750 | dpp7
Description
dipeptidyl-peptidase 7 [Source:ZFIN;Acc:ZDB-GENE-050306-16]
Coordinates
chr5:28571665-28574089:+
Coord C1 exon
chr5:28571665-28571783
Coord A exon
chr5:28571784-28573932
Coord C2 exon
chr5:28573933-28574089
Length
2149 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
CGTTTTGTCTTCGGCTTTAGGCC
3' ss Score
9.89
Exon sequences
Seq C1 exon
GCATTGTGTATAATAACACCGGAGAGCTGACATGTTATGACCTCTACAGTCTCTATGTGGAGTGCGCTGACCCCACCGGCTGTGGCCTGGGCTTTAACAGCTATGCATGGGATTATCAG
Seq A exon
GTAACCAAATTGCTTTCCACTAAACCCTCAATATCAGTTTTTGCTGCTTGCCGCAAGTAATATTCGTGCTACAATTGACATCACACAATCAGAGGATGAATTATAGACTTTGTTACATTATATTTGTACATTTCTTAAAACATAACTGCTTCAAAATGAGCTTGTTTAGCACAGGCGTGTGTAATTAACATTGCAGGAGAGAATGCTGAATTATTTTCTAAGAACTCAATTATTTAAATGATTGTTTAGCACAGTTCTTATTTTATTCATGAATCACAAAACCAAAACAAAGAAGATCTCAAGTCTTGAAATTTTCACAGACACATTTTAATGAATTTTGAAGCTCTTACATCAGTGGTGTCCAAACTCGGTTCTGGAGGGCCGGTGTCCAACCCCAAATCAAACACACCTGAACTATGCAGGACAGCGGCCCTCCAGGACAGAGTTTGGACACCCCTGTCTAACATGATATCAAAACTTACATATTGATACTGTGAGCTCACATTGCTAGTTTTGTGATGAATAGTTCATTTGTGCATGTCATTAAGAAAAGAAAAATCATTAGCCCCTGTTATCTTGTCTGTCTGAGGCATTGAGCGTGATTTACATTTAACCACACCCCTTCGACACTCAGTTTTGGCATCTCTATGACAACAAACAAATGGTGTGAAAAGGAAGTGTCTGTTAGGTTGTAATAACTCTCCCGAAACTCTTTTCCTGATCTTTCTAAATGAAATGCCTACTTTACTACATCCAATCAGCTCTCAGTGGAAAAAAAACAAGCCTCGCCCACTGTTTTCTCATTTAATATTTTGTTTATCTAGGAACTTCATCACAATATAAAAATAAAATGGTTGCAGCTTCCCGTTCATGCAGACTTTAATGATTACCTGAATTAAACAGACAAATGTAAGTCACATGACTGCACTGCCATAGCCACTAAGTTTTTAGCCCATTAGAATGCTTGTTACTAGCTGCTAGTCAAGTGTATTCGTTATCCAATTACTTTTGTGCCTTAAGCAGGTCCGCAGTACCGTAATAAATGTAGTTAATCAATGGATTATTATTATTATTCATTATTATTATTTAATTTTTTATAAAAAATATTACTGTTATAGATTATTTTTGTTTCAGTTATTTGTGTACTTGATGTTAATTGTTGGTGTTTATGGCGTTAAGCGTGTCATTCTTGTTTTATGTGAAGCACCACCATGTCAGAATGAATTGCGCCAAGGGGAATAATAAAGCTTCTAACTAACTAACGTACGTCATAATTTTCAGGTTCAAATGCTCTATTAAATGGCATGAAAACTTATAAAAAAACACGAGAGTGCTAATATCCTGTTACAGTGAGCTGTACTAATACTGTCCACTCATAATCATCATCTTAAAATTGAATTCTCAGATGACCAGGCAGGGGGTCGTCTTTTATGAAACATTAAAATACTGGTGTCTGGGAAGCTGTGAGCTCACATGCAGACTGTAGTTTTATATTAGCCTAAATGTTTGAAATGGCTAATTTATTGATGGATATAAATGAGCGAGAGTGCATTGTCATTTTAAACAAGTCAAGGCTTTGACCTGAAAACAGCATTCAATTACATCACAACTTTACAAGAAGATAGTTGAGCAATAGCACAAGTACAAACACAACAATACTACAAGTTCTGACAGCAAGAAAAGAAAAGAAAAGAACTTCTGAAGTTCCTTTTATCCACTTTATAGCCTTTTCCTTTAAGATGCGTAAAAGCTTTTAAAAAACAAGGCTGCCGATTGTTTAAATGTAGCAGAATGAATAAAAAATCTTTTGTAAACAACAACATCTGTCAACATTTAACCAAAAAATAAATATAATAAAACTTTTGAAAGATAATTATTAAAGAAGCTAGTTAAAAACCTTTAGGATGAATTCCTGCATTACTACATTTAGAAAATTCATATTGCATTATTTAAGAATAGTTTTCGAAAAGAGGTGTACAAATAATTCATTTCTAATAGCTCATCACTTCTGTCTTTGCCATGATGACAGCACAAATTATTTTACTAGTTATTTTGCAAGATACCAGTATTTAGTATTTAAAAAAAGCTATTTAAGTTGGAAGAAAAGAAAATGTCACAGGAGGGCTTATCGTTTTGTCTTCGGCTTTAG
Seq C2 exon
GCCTGCACCGAGATCGAGATGTGCTTTGAGAGCAACAATGTGACAGACATGTTTCCGGCCATGCCGTTCACTGAGCAGCAGAGGGAGCAGTACTGCTCAAACAGATGGGGAGTTGTGCCACGGCCAGGGTGGCTGAAGACACAGTTCTGGGGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027750:ENSDART00000037891:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(9.1=100)
A:
NA
C2:
PF055777=Peptidase_S28=FE(12.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]