GgaINT0126632 @ galGal3
Intron Retention
Gene
ENSGALG00000009105 | DPP7
Description
NA
Coordinates
chr17:705424-705779:+
Coord C1 exon
chr17:705424-705542
Coord A exon
chr17:705543-705622
Coord C2 exon
chr17:705623-705779
Length
80 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CAGCTCGTGTTCTGTTTCAGGTG
3' ss Score
10.16
Exon sequences
Seq C1 exon
GCGTGTTCTACAACTCCTCTGGCTCAGCGCAGTGCTATGATGTGTACCGACTGTACCGGCCCTGCGCCGACCCCACGGGCTGCGGCACCGGCGCGGATGCTGAGGCCTGGGACTACCAG
Seq A exon
GTGAGGCGCTGGGGATGGCAGCAGGCGGCAGCCCGTGCACCGCCAACCCCTCCTCGGTGCCAGCTCGTGTTCTGTTTCAG
Seq C2 exon
GTGTGTACCGAGATCAACTTAACTTTCAACAGCAACAACGTGACAGACATGTTCCCTGAGATGCCCTTCACAGAGGCCATGAGAGAGCAGTACTGTTGGAGCCGATGGCGCGTGAGGCCGCGAGCGCAGTGGCTGCGGATCAACTTCTGGGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009105:ENSGALT00000014829:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(9.1=100)
A:
NA
C2:
PF055777=Peptidase_S28=FE(12.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAACTCCTCTGGCTCAGCG
R:
TGAAGGGCATCTCAGGGAACA
Band lengths:
181-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]