HsaINT0051835 @ hg19
Intron Retention
Gene
ENSG00000176978 | DPP7
Description
dipeptidyl-peptidase 7 [Source:HGNC Symbol;Acc:14892]
Coordinates
chr9:140006325-140006682:-
Coord C1 exon
chr9:140006564-140006682
Coord A exon
chr9:140006482-140006563
Coord C2 exon
chr9:140006325-140006481
Length
82 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
3' ss Seq
TCAGGCTGGGGCACCTGCAGGCC
3' ss Score
2.52
Exon sequences
Seq C1 exon
GGCTGGTCTACAACGCCTCGGGCTCCGAGCACTGCTACGACATCTACCGGCTCTACCACAGCTGTGCTGACCCCACTGGCTGCGGCACCGGCCCCGACGCCAGGGCCTGGGACTACCAG
Seq A exon
GTGTGGGGGTGTGGGTGGCCTGGAACCACTCGGGGGCAAGGGTGGGCGTGGGCTGGCCTGACTCAGGCTGGGGCACCTGCAG
Seq C2 exon
GCCTGCACCGAGATCAACCTGACCTTCGCCAGCAACAATGTGACCGATATGTTCCCGGACCTGCCCTTCACTGACGAGCTCCGCCAGCGGTACTGCCTGGACACCTGGGGCGTGTGGCCCCGGCCCGACTGGCTGCTGACCAGCTTCTGGGGGGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176978-DPP7:NM_013379:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=PU(13.4=90.0)
A:
NA
C2:
PF055777=Peptidase_S28=FE(12.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGCTACGACATCTACCG
R:
CTCGTCAGTGAAGGGCAGGTC
Band lengths:
169-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)