DreINT0061762 @ danRer10
Intron Retention
Gene
ENSDARG00000068157 | ehmt1a
Description
euchromatic histone-lysine N-methyltransferase 1a [Source:ZFIN;Acc:ZDB-GENE-040724-44]
Coordinates
chr5:28899105-28900222:-
Coord C1 exon
chr5:28900118-28900222
Coord A exon
chr5:28899260-28900117
Coord C2 exon
chr5:28899105-28899259
Length
858 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGG
5' ss Score
3.93
3' ss Seq
TGCTGTGTTGTTGTGTTCAGGAG
3' ss Score
9.28
Exon sequences
Seq C1 exon
GATGATGGCGGATGGGCTCCTCTCACCTGGGCCACAGAGAACATGCGTCTGGAGCAGGTGAAGATGCTGATTTCAGCAGGAGCTGATGTCCAAATAAGAGATAAG
Seq A exon
GTCTGGGAACTGAAAGTCCCATCTTAATATTCCAACTGTTTGATTCATTTATTTCACCTTGTTTGAAAATCAGACTGGAGAGTGTCCCTGCCTGCAGAAAAATATATATATATGAAAACATTAGATTTTAGCATTATAAATGATTTGTAGGATATAATTTGAATCTATTTTGTTCAGATATTTAATAAGCAAATTTATTATGTAATTGCAAAGAAATGGCAAAATAAAAACAACACAATGAATTAAGCACAACATTTATAAGTAGACTGAATTAGTATTTGATGTTTTTTACAGTTTTCAACAGAAATTAATTATATACTTAATACATTAAATAAATTGGTTCATATACTGAAAAACATATATATTTTTGTAATGTATTGTAGGAAAACAAAATGTCAGTAACGTTTTTTTCTCCCCAATATTGTGCAGCTCTGAAGTAAGTTTAAGCAAAAATGCAATATTTTAATAAATAAATGAATTTGAAAAGACAAGTAAGCAGTAAATGTTAAATAATAATATTGACATTTTTATTCATCAAGAAGTCCTGAAAATGTATAAAGCAGCATTTTTTTTCAGTAATCTTAAATGTTTTTGGAGCACTACATCAACTTTGCAGACTGATTTTCAAAGGGTTGTGTGACAATAAAGATTAGAGTAACGATGCTTATTATAATTGTTTTGGTCTTCAGAGGAATAAATTGTCATGCGGTTATTATTATTTTGTTTAATTTATGAAAGCAGTCTTGGTGTGCAGAATAGAGATAGAAATCTTCTGGAGCCTTTAGGTTTTGAGCATCATTGTATAAATGTATGTGTGATGGACTGGAGATGAATACTGTGCTGTGTTGTTGTGTTCAG
Seq C2 exon
GAGGAGAATTTGTGCCTCCACTGGGCTGCTTTCTCTGGCTGTGATGAAATCGCTCAGCTGCTGCTGGACCACAGATCTGACCTGCACGCGGTGAACGTCCATGGAGACACTCCTCTTCACATCGCTGTCAGACAGAACCAACTGGACTGCGTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068157:ENSDART00000126018:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(45.8=94.3)
A:
NA
C2:
PF127962=Ank_2=PU(54.1=88.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGATGGCGGATGGGCTC
R:
CGCAGTCCAGTTGGTTCTGTC
Band lengths:
256-1114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]