GgaINT0126653 @ galGal3
Intron Retention
Gene
ENSGALG00000008472 | F1P2X9_CHICK
Description
NA
Coordinates
chr17:2472642-2475290:+
Coord C1 exon
chr17:2472642-2472746
Coord A exon
chr17:2472747-2475135
Coord C2 exon
chr17:2475136-2475290
Length
2389 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGG
5' ss Score
4.51
3' ss Seq
TCTGTTTTTTTCCCCTCCAGGAG
3' ss Score
12.5
Exon sequences
Seq C1 exon
GATGACGGAGGCTGGACGCCGATGATCTGGGCCACTGAGTACAAGCACATCGAGCTGGTGAAGCTACTGCTTGCCAAGGGGTCAGACATCAACATTCGAGACAAT
Seq A exon
GTGAGGTTCTTCCTGGAATCTGTTTTAGAAATAATCCGCAATCTCTGTTTAGAAACCAGAAGAGCCCAAGAACACCAACTTTGGGCTCAGTACAGGGAGGCACAGTGATCCCTATACACAAGTGACAGTGAGTGTTGGCTGGGAAAATGTTCTTCCTTACTCTAGAAGAAGCTTTACGAGCAAGCAAGCAGTCCTCCACCTCCCACATAGACTCCCTGGGAGCAGAGTGGGCCCGGCAGCTCTGGGTGTCTTTCTGTGCCAGCTGATTTCACAGAGTTTTTCAAGTAAAAAGAGAAAATGGGAGGGAGTTGATGGGGGAGAAGAAGGGAAAGCACATCCACGCTTCAGCTCAAGAGATTCAGTACCTCAGCAAAGCACCTTTTCTCTTAATAGAGTATTTCTCACTTTTTCCCCTCTGCTGTTGAAACCCTGGAAGTACCTTCAAGGGAAGCTTGGGTATGAAGAGCTACTCCAGGCGTGGGTCTGTAGGAGATGAGAGGTGGTTGATAAATGAGGGATGACTGGCTTCTCTGCTTTCTGTATGTTACAACAAAGTACTTACCTTGCCATCATCTCATGCCCTAGCATACCTCATGACAATATATTTTCTTGTCCAGGGCTGCTAGTGCTTTTCTGAATCTGATGGATGTAAGCATTATTTCATGTTTGTCTCCCCGAATGCCTCTTCTCGTGTCTGTTGGGTGCTGGCAGGGGTAGGTGCTGACACATTTGTCCCATGGAGCTCAGAGTGGCGCCAGCTGTGAGTTGCCTTCCCCAGTCTGAAAGCCCTTTCATAGCAGGAGCCTCCGTTCCTTGGTAACTTAAACAGTTCCCAGGCAGTTCTGGACCTGATACTCTTCATAAAAGCCAAAGTCAAGGTGGGAGAGGGAGCTTTTGGGTTGTTGCATGACTTCAGAATCCTAGCACAGACTGCACTCTTGTTTGAGCTGCCACAGAAGCCTTTGGCTGCCAGTTAAAAGTTCACACGTTAAATGATAAAAATCAAATTGTCTCAGTCAACAATTCACTTGAAAGAAAAATATCCCCTGAGCAGATGTATATATCACATATCTGTTACTGTACCTACAGCTCAGTGTCTCCTGATTGCAGCCATTAAGAAGTAATGTCATTTGTGCTAGGAAACATCATACTCCGTGAGAAACCCTTTTGATTGTAATTACGCTGCTGTTAGGCCGTAGCCAGTGCAAAGCAAAGTAGCAAATCTAGGTGTCTGTAACGTGTCTGAGTAGCAGCATGTGGCATGCAATCAACAGGATTAATCTTTTATAGATCAGTACATGATGCTGATGAGGATTTTTCCTGGATTTTGCCATAGTAGGAGGCAGAAGCCATGCACAAAGAGGTCTCCCCACTCCCTGGTGCATGCTAGTAGCCTTCTCGTGTAAGAGGAGATCTAAGTTAGGTTGCAACGACTAAAAGATGTGCTTTATTTTTATTAAAAAAAAAAAAAAAGAAAAGAAAAGTTAGGTGATCATTACTGTCATTGCACGGGAACAGGTTGCCCAAGGAGGTGTGGATGCCCCATCCCTGCAGGCATTCAAGGCCAGGCTGGATGTGGCTCTGGGCAGCCTGGTCTGCTGGTTGGCGACCCTGCACATAGCAGGGGGTTAGAACTGGATGATCACTGTGGTCCTTTTCAACCCAGGCCATTCCGTGATTGCATTGTTGTACTGGGCATCTTTAGGGCTTGTCAGGGGGAAGGACTCTAAAGTGTGCTGCCAATTGCACTGTAACAGAAAACAGAGTATCACTGCTTAAAATATCCCCATCAAATAGATGAGTGTTCAGCTATTTCTAGTGCAGCTAGTGAGAGATGAGTACGTACAGTATTTAAGAGATGCCTGAATTCAGATTGATTGCTTTCTGTGTAGCTCATGGTTCTCTTTCTAGCACCTTCATATACCCTACAGCCTGTGCTCCGTTCTTGCTCGGCAGATGCTTTTTCTCTTCGATTTTGTAGCCTGGGAGGCATGCAAGTTTTGCTGTGTGTCTGGGCTGGGGAAACTCAGCTTCTATCTTTCTCCACTGTACTTGTTCATGTCTGTCACCTCTCTCATGGATTGATCCGGATTGTTTTTGTGGCTCACAGATAGACAGTTTGTCTGTGTGCAAAAGGAAGGCGACGGAGCGTTTTGATGCAGCCTCCCCAACTCTGTGTGTGGAGGTGGCTGGAGTGAGAACTCCCTGCTCGGCTCTGCTGAGATTTCCCTGCCTGCCTTGGGACTCCCAGCCAGAACGAGCAGTGTAGGGTAGGAGAAGGAAGCTACATGTTGAATGCCTCAGGTGTAGAGCTGAGGATGATGGAGTTCCCAAAGCAGTAGGGTTTTAATGCACTAAACAGCCTCTGCTCTGTTTTTTTCCCCTCCAG
Seq C2 exon
GAGGAAAATATTTGTTTGCACTGGGCTGCTTTTTCTGGCTGTGTTGACATTGCAGAGATTCTGCTGGCTGCTAAGTGTGATTTACATGCGGTGAATATTCATGGAGATTCCCCCCTGCACATTGCAGCCAGAGAGAACCGCTACGAGTGTGTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008472:ENSGALT00000013807:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(35.1=94.3),PF127962=Ank_2=PU(3.6=5.7)
A:
NA
C2:
PF127962=Ank_2=PU(50.0=88.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]