DreINT0061784 @ danRer10
Intron Retention
Gene
ENSDARG00000026634 | ehmt1b
Description
euchromatic histone-lysine N-methyltransferase 1b [Source:ZFIN;Acc:ZDB-GENE-080515-3]
Coordinates
chr21:14560556-14561082:-
Coord C1 exon
chr21:14560978-14561082
Coord A exon
chr21:14560711-14560977
Coord C2 exon
chr21:14560556-14560710
Length
267 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
AATCTCAATCTTCATTCTAGGAG
3' ss Score
7.4
Exon sequences
Seq C1 exon
GATGATGGAGGTTGGACAGCCATGATTTGGGCCACAGAGTACAAACATGTGGACCAAGTGAAACTCTTGCTCTCCAAAGGGGCTGATATCAATATACGAGACAAG
Seq A exon
GTGTGTGTACTGCTTCTCAATTATTGCACATTAATCTGAATTTTAACAATATTTTGTAGTATTCTTTCTGTCACAATTTCAGTACTTTCATAGGTTTTGATCTGTTAAAATTGCTATAATTCATGTTTGTTAGGAGTCAGTAACTATTGTAAAATATAAACTGACTATTTGTTACCAATGTTACCATCTACTGGATATAGACAGAGCAGCTGATATGGCATTAAAATAAATGCATAAATCTGTTACAAATCTCAATCTTCATTCTAG
Seq C2 exon
GAGGAGAATATCTGTCTGCATTGGGCCGCTTTCTCTGGCTGCGTGGAAATAGCCGAGATCTTTCTGACTGCCAAGTGTGATCTCAACACCATGAACATCCACGGAGACTCGCCGTTGCACATAGCGTCGCGAGAGGGCCGGCTTGACTGTGTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026634:ENSDART00000124223:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(35.1=94.3)
A:
NA
C2:
PF127962=Ank_2=PU(50.5=90.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGATGGAGGTTGGACAGCC
R:
TTTACACAGTCAAGCCGGCC
Band lengths:
260-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]