DreINT0061796 @ danRer10
Intron Retention
Gene
ENSDARG00000026634 | ehmt1b
Description
euchromatic histone-lysine N-methyltransferase 1b [Source:ZFIN;Acc:ZDB-GENE-080515-3]
Coordinates
chr21:14565726-14566530:-
Coord C1 exon
chr21:14566387-14566530
Coord A exon
chr21:14565872-14566386
Coord C2 exon
chr21:14565726-14565871
Length
515 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAA
5' ss Score
5.07
3' ss Seq
TTAAAAGTGGTGTTTCTTAGCTG
3' ss Score
2.98
Exon sequences
Seq C1 exon
CTCCAGTAACGGAGATCCAGTCTCGGCCAGAAAGCCAGAGCGCCCCATCAGTCCCTACTGCTCACAGAAAGGAGTATAAAGAAGTCCCTCTAGACTCTCTCAATCTAGCAGCACAGGAAGCCTTATTGACATCTCAAAATACAG
Seq A exon
GTGAAACCAAATTTGTCCTGCTTAAATTGGGAAGGTATCAATTGTATTTGTTGGGGAAATCTATGTGAGGAGGTGTAAATGGATGTCTTGTTTTGATTAAATAATGTGAATTTCTTTTCCCTTAAAGTTTTGTTGTTTGCATTTCTAAATGTCTAAATGTTATGTCATCTGATCAGAAGTCATGTTTTATTTTGGATATTTTCAAAGGGGTTACAATCATTGCATTTGAAGAATGTTATATTAGTGTGAAGTTCAGAGGAGGATTAATGTCTGGCCTTTGCAGTAGCCTCCATCTTGGATCAAATGAGTCATCAACACTCTAGCAGATATGGTGCCCTCTGGTGGTCTTGCGTGAATTTAGAGAAATCCATATCAGAAACGTTAATGGCTGCATCTATGAAATATTTCTGATGGATATATGAATGGATAGGATGTAACATTGGCTTTGTCCCAGCTATGTTTGAAAAATGGTGGCTTCTCATGAATATTAGATTCTTAAAAGTGGTGTTTCTTAG
Seq C2 exon
CTGCTTCAGGGTCATTGCAGAGCACAGATGCAGACATGGTGCAGGAACTGCCTCTATGCAGCTGTCGAATGGAGACACCCAAGAGTCGAGAGATCCTCACGCTTGCGGACAGGAAGTGTATGGCAACTGAGAGCATTGACGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026634:ENSDART00000124223:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=NA C2=0.184
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGTAACGGAGATCCAGTCT
R:
GGCCGTCAATGCTCTCAGTTG
Band lengths:
287-802
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]