Special

MmuINT0055990 @ mm9

Intron Retention

Gene
ENSMUSG00000036893 | Ehmt1
Description
euchromatic histone methyltransferase 1 [Source:MGI Symbol;Acc:MGI:1924933]
Coordinates
chr2:24703464-24708322:-
Coord C1 exon
chr2:24708185-24708322
Coord A exon
chr2:24703610-24708184
Coord C2 exon
chr2:24703464-24703609
Length
4575 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
3' ss Seq
GATGTGTCTGTGTGACTTAGGGC
3' ss Score
7.74
Exon sequences
Seq C1 exon
GTTCCGAGGCTTGTAAGTCATCTCCAGGAAGCATGGAGCAGGCAGCTCTGGGAGACAGCGCTGGCTATATGGAAGTTTCCCTGGATTCCCTGGATCTCCGTGTCAGAGGAATTCTGTCTTCCCAGACAGAAAATGAAG
Seq A exon
GTTGGTGTTGGAGTGTGACTACACCATCTTGCTTGCTTACTGGCCTAGCTCTCCGTGTTAGCCTGATGCCCCCTGGTGGATAATAATGGACAATTTGACAAAGCACTCATATTTTAAAGGTGTCTGAATAGACATGATGCAGATCATTAACTGCTCAGGTGGGAGACAAGAAGTGTGAGAGCCCTCTAAGAATGAAGCAGCAGAAGCCTTTTGCAATATTTGGGGTGCTAGTAATTGCGATTCACAGTGTGTTCCCAGTTGTGAGCAGACACACGTTGTGTGTGCCACCCTTCTGGATGTAATGGGCTTATATTTTGTGCAGTGTGCCTGTAAGTGATTGCTGATTTTAGCTCTGGTTGGTTGTAGCTTGTCTTCTAGCTTCTCTTGAGCTGCCCTTGTTCTTCTGTGTTTGCAGTGGAGTGCAGCCTCCAGTTACCAGGTGCAATAGTATCTGCCGTTGTGCCTGGGTCATTGTGGCTTGCTGTCCTTTTTTTTTCCTGCCTGCTCCGCTTCTTTTAAATCACTTAAAAACTTTTTAGCCATGAAAACTAACCAATTAATGATATCTAAAAATCTTTATGAAACAGAATGTTAAGGGGAAATTTAAGACTCCACAGCTTTTTACACTGTGTTCAGATTTCTAAATCATGGTTGTGTTTACTGTAGGGATTTAATGATAAAGGACAGACACCCAGCTTTTAAGATTTTAAACACTAGGAAACTGTGTTTATTTTAGTAAACCACATCTTTGCCTCGCACATGAATTTTGGGTTTGTTCAAAAAGTGATTTTTTTTTGTTTGTTTGTTTGTTTCTGTTTTTTCTTTTATTCTCACAAGTAGAACACAAACCTTTTCAAATTTCATAAAGCCCTGTTGTAGGTAACTTGTGTCTCCTAAGTTAAATAGAACTATGTTTTAAGTATTATAAACTTCTAGATTTGGATGATTAGAAATTTAATTGTAATCAGGAAATAATGTTTTATCAAATCCACCCCATTACTGTTTAGCAGAATCCTGCCTGTTGTAGGTGCATTAAGAAGAGATTGTGATGAGATTTAGGAAGCCCTTTTATGTAGAAATGTGCTGTTCCATCTCTGATACAAGTGAAGGTCAAAGATAATAAAAGCAACTCTAAAGACTTAAGAGTGGAAACATCTAGAAAGGTTGGATCCAGGTTCATGAGGCAGGCAGGCAGGCAGGCAGGCAGGTGGGGGTGAGGTGGGGTTGTAAAATTGTTCCCTTGGGTTCTATGGCATTTTGTAGATTGACCTACCTATGATTGATCAACACTGACTCATCAATCAGTGATTGGTTTGTGTACAACAGACATGCTTTTGACTTAGAGAATCAACATCTTGATGAAAAGCAGCTTTGCCTACTTGCCTTCATTTTTAAAGTATGGAACTGGGATACCTGAAGGTAGGTAGTGGGAGAGTAGGTATCTTGGGAATTTTCTGAGGCTGGTCAGTGCATTCAGATGGTCAATCCAGTTTTTGTTCAAGAGGGTCTAGGCTTGAGCTGAGGACCTAAGTGAATATTTGTGTTGAGGTTATGAATCATTGTCTGCCTTGTCTTTGCCCACGATCTTTGCTTGTGAAGGTAATAGGCTAAGGACTTGAGTCTGGGTAAAGACAGGAGATAAGGACACTGGCAGTGTGGGTGATCAGGGAATCAAGCTCAGATGAGAATTAGTGTGTGTTTACTTCTTTCAAGGTAGTGAGGTGTAGGAGAATGGAGGCAATAAATGAAGTGAACTAAAGTCTCATCCAATAGCCAACACTATTCAGAGCATCAGACAGTTTATACTCTGAGGGTTGAGAGGCATCACATGAGTAAGTGTATAATCACAAGGGTAAGCCACACATGGCAGACAGGCCACTTGCAGCAGGTGAGCCACACTCTCTGTAAAGACATATAGACAAATAACAATATCCATATGTAATGAATAATCTAAAGTAAACTCACTCCTCTCTCTACCTAAGAGGTGTATGAAGTACATTCTGAGAGCAGTTCTGTGTTTTTTGAAGAAACAGAAAAGCTCTTATAGTGGTTTCTTGGGGATTTTCCACAAGCATTTAGAAATCATCTTACACAACTCCATTCTTGAGGCATGTTCTGACAGTGTGCACACGTGGAGGTTGTGGCAGTTTCTCCTTTTGATGTCTCAGTAGTCCTTCAATTGTAGAGATTGAAGCACACCCATATCTATCTATGCAGATGTATATGTTCTGACAGTGCTGCCCGGGAGTGTACACTCTTCCTGATGTCAGCTCAGCCTCCTCAGGCACAGATGGTTGGTGTGGCAGTCGGATGCTTACTTGAGCTTCTTCTGTATTAGAATGTGTGTGTGTGCTCCTGTTTATATCGGGTTACTGAGCAGGGACTTCTCACAAGCCCATTCATACTTTGGGTGATTCGAGTTTGAGTTTTACTTTAGATTTTCTGATCTTTTGCTGTGTGTGGGAAGTCAGGCAGCTAGATTTGTCTGGAATCAGTTCCCCCTTTCCATAGAAGTTTGCTGTCTTTGAGACAGAGTTTTATTTAGCCTAGCATGGCCTTGACTTCCCTGTGTTGTCAGGTTGGCCTGGGATTTCTGATGTTTCTGCCTCTTATCTCCTGAGTGCTGAGATTATAGGCATGTACAATGACACCCATTGTCTTTAGTGCTGAGGCTCCAACACAGGACTTGTGCATGCTAGATAAACATGCTGCCAACTGAGCTACACTTTCAGTTCTGCCCATCATTTTTTAGCCATTTGTGGGGACTAGATTGGCTAAGACCCATAACACATTATCGAGAGGCCAGAGTTAAACAGTGAATGGCTTCCTGGGGTAAAGGTAGATCCTAGGTTCAGCATGGCATTGCTAGAGACCAACTGAGGCATTGTGTGAAGGTAGTTCAAACCAGAAGCAGTTCAGGGGTCAGTGGGGGGTCGGGGGGTGGGGGTGGGGATCATGGAAGGCTTGTGTTGAGCAAACTGGAAGTTGGGCAGAAAAATAATTTGGTTACAGTTATTCGTTCTGTTGATGAGTCCCTTGATAAATCACAAAGCTAGTTCTGAGTGGTTTGAAATTAACCATTTCATTTTTCTGTAATCCAAACATTCAGAAGAAATAGCTCAACATTAGTTTTCATCAAATGAGCTAGCTAGCTTGAGGTGCTCAGGGTTCTTTGGGTGTGGTCTCAGAGTTACTGTCATATTCTTTAATTAAATTAATTACTTAATACTTGAGACAGGGTCCAGATATGCAACATGGATGCATTGGAGCTTGATAAGTAGTTCAGGGTGGCCTAGAACTCAAAAGAGATTGTTCCATGTCTGTCTCAAAATTAAAGGCCTGCACATCTTGTAGGGTGAGAGTCCCAGTCTGTTTTTTAGGTGCGAATATTAGTTAATTATTCTTAGAGCCGCAATACTGTTTCAAACACAATTCATCTTTTTTTTTTTAAAGATTTATTTATTGTTCTATGTAAGTACACTGTAACTGTCTTCAGACACACCAGAAGAGGGCATCAGATCTCATTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAGCAGTCAGTGCTCTTAACCACTGAACCATCTCTCCAGCCCCACAATTCATCTTTTATCTCTGCTGTTTAACAAGAAAGAGGACATGGTCTGACCCAGTGTCTTTTGGGAAGTAGTCCTGGAAGCTACTAGTCAGATCCCAGAATCCTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACCAGAATCCTTTTTGCATGTTCTTTCTATGAGGGGGTGAGTTAGCTTTACAGTGTATAGGGTTTCCTTTAATCTTAAGGTTTTTTTTTTCCCACTGTGGTATTAGGCACTATGTTATTGTGAACATTTTTGGTTGTCTGTCATCTATCATGTATGTAGGCATGTGGGTCGTGACATGCATGTGTGGAGGTTAAAAGACAACTTTTACCTCTTACTTCTTTTCTTTTACCGTGTAGGTCCTGGGGATTGAACTTGGGTGCTTAGACTTGACCACAAGCACCCTTACTTGCCAAGACATCTCACTGGTCCCACTTTCCTTTGTTTTCCTTCTTTAGCCTATTATATGGATTCTTTGGCTAGTGAATAATGTTCTGGGTAACGATTAAACCATTATAAAGCCTTATACATGGAGTTTTTTTTTTTTTTTTTGTTTTTTTTTTGTTTTTTTTTAAATGGGTAAAATTTAGAGCCAAATGAGGGAAATAATGTTTCAACATGTAGTGAAATCTTTTCTTGCTTGAAAACTGGGTTTAGGAATTGCTGATGAACTTGCAGCCTGTCCTATGACATGGACATGTAGATATAAATAAGTGAGGAGTTTTGGAAGATTTGGTAGCTGATATGTTTGTGGGTGAGATACAGTCTGTTGCCTCACTTCCCATGTAGCAGTGCCGATGTGTAATGTCAGTGTGTAAAGACTGTCATTGATTGTTCTCTGGACAACCCTTTGTAGGTCAGGGTTGCTTGAGCTGATGTGTCTGTGTGACTTAG
Seq C2 exon
GGCTGGCCAGTGGTCCGGATGTGCTGGGGACGGATGGCCTCCAGGAAGTGCCTCTCTGCAGCTGCCGAATGGAAACCCCCAAGAGCCGCGAGATCAGCACCCTGGCCAACAACCAGTGCATGGCCACTGAGAGCGTGGATCACGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036893-Ehmt1:NM_001109687:9
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.755 A=NA C2=0.370
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000100002





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000046077, ENSMUSP00000088906, ENSMUSP00000119057
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr9:137758012-137762674 
LOW PSI
HsaINT0054744
(EHMT1)
Human
(hg19)
chr9:140652464-140657126 
LOW PSI
HsaINT0054744
(EHMT1)
Rat
(rn6)
chr3:2021319-2025860 
ALTERNATIVE
RnoINT0053564
(Ehmt1)
Cow
(bosTau6)
chr11:105464034-105466715 
ALTERNATIVE
BtaINT0054914
(EHMT1)
Chicken
(galGal4)
chr17:2049627-2051504 
ALTERNATIVE
GgaINT0126644
(EHMT1)
Chicken
(galGal3)
chr17:2456930-2458807 
LOW PSI
GgaINT0126644
(F1P2X9_CHICK)
Zebrafish
(danRer10)
chr21:14565872-14566386 
ALTERNATIVE
DreINT0061796
(ehmt1b)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"